Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g118320.1.1 | Tomato | nucleus | 96.42 | 96.91 |
| PGSC0003DMT400054245 | Potato | mitochondrion | 12.8 | 94.94 |
| CDY15727 | Canola | nucleus | 63.31 | 71.48 |
| Bra030030.1-P | Field mustard | nucleus | 63.14 | 71.29 |
| CDY03901 | Canola | nucleus | 63.31 | 71.21 |
| AT1G24290.1 | Thale cress | nucleus | 62.29 | 69.52 |
| KRH14043 | Soybean | cytosol | 63.14 | 69.16 |
| VIT_03s0017g02320.t01 | Wine grape | nucleus | 64.16 | 68.61 |
| GSMUA_Achr3P23690_001 | Banana | nucleus | 42.15 | 61.6 |
Protein Annotations
| Gene3D:1.10.3710.10 | Gene3D:1.10.8.10 | Gene3D:1.10.8.60 | Gene3D:1.20.272.10 | Gene3D:3.40.50.300 | MapMan:35.2 |
| InterPro:AAA+_ATPase | InterPro:AAA_assoc_2 | InterPro:ATPase_AAA_core | ncoils:Coil | InterPro:DNA_pol3_clamp-load_cplx_C | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006260 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR015940 | UniProt:M1B471 | InterPro:MgsA_C | InterPro:P-loop_NTPase | PFAM:PF00004 |
| PFAM:PF00627 | PFAM:PF12002 | PFAM:PF16193 | EnsemblPlantsGene:PGSC0003DMG400014180 | PGSC:PGSC0003DMG400014180 | EnsemblPlants:PGSC0003DMT400036771 |
| PFscan:PS50030 | PANTHER:PTHR13779 | PANTHER:PTHR13779:SF7 | SMART:SM00165 | SMART:SM00382 | SUPFAM:SSF46934 |
| SUPFAM:SSF48019 | SUPFAM:SSF52540 | InterPro:UBA | InterPro:UBA-like_sf | UniParc:UPI000295B1DC | SEG:seg |
Description
AAA-type ATPase family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014180]
Coordinates
chr3:+:57897587..57899755
Molecular Weight (calculated)
64111.3 Da
IEP (calculated)
6.785
GRAVY (calculated)
-0.343
Length
586 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQQLVSMG FSEDIAVEAL TATGGDIVKA TEWILSHGHN HKGSQDSCNF NPVSSSTSGS PTTAAHDHHP FQPKIDRFFQ FQSKPLTPTS VSVLKPIVST
101: KGVTTHEEEE EKIDEEPPLL RLTKRPKVVE SEQRKKRPPH EPLSERMRPR TLDDVVGQDH LLAPKSLLRS AIDCGRLPSI LLWGPPGTGK TSIARAIVNT
201: CSASEAGGNT YRFVSLSAVT SGVKDVREAV DEARRMKKKS NKRTILFIDE VHRFNKAQQD SFLPVIEDGS VIFMGATTEN PSFHLITPLL SRCRVLTLNP
301: LKPHHIATLL RRAAADSDKG LSCCMGESMK IEVNDECIEF LSTNCDGDAR VALNALEISA TTAAARTGMA RGSNEELGDK QGNADESPLS AVVSLDDVKE
401: AMQCKHLAYD RAGDEHYNLI SALHKSMRGS DANASIYWLA RMLEGGEEPL YIARRLVRFA SEDVGLADPS ALGQAVACYQ ACHFIGMPEC NVILAQCVAY
501: LALAPKSIAV YRAIGAAQKV VRESVGQNEG VPLHLRNAPT KLMKDLNYGR DYIYPPDNPN SSQTYLPPSL QGYKFLDWPN VAANDR
101: KGVTTHEEEE EKIDEEPPLL RLTKRPKVVE SEQRKKRPPH EPLSERMRPR TLDDVVGQDH LLAPKSLLRS AIDCGRLPSI LLWGPPGTGK TSIARAIVNT
201: CSASEAGGNT YRFVSLSAVT SGVKDVREAV DEARRMKKKS NKRTILFIDE VHRFNKAQQD SFLPVIEDGS VIFMGATTEN PSFHLITPLL SRCRVLTLNP
301: LKPHHIATLL RRAAADSDKG LSCCMGESMK IEVNDECIEF LSTNCDGDAR VALNALEISA TTAAARTGMA RGSNEELGDK QGNADESPLS AVVSLDDVKE
401: AMQCKHLAYD RAGDEHYNLI SALHKSMRGS DANASIYWLA RMLEGGEEPL YIARRLVRFA SEDVGLADPS ALGQAVACYQ ACHFIGMPEC NVILAQCVAY
501: LALAPKSIAV YRAIGAAQKV VRESVGQNEG VPLHLRNAPT KLMKDLNYGR DYIYPPDNPN SSQTYLPPSL QGYKFLDWPN VAANDR
001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL
Arabidopsis Description
AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.