Factsheet for VIT_03s0017g02320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054245	Potato	mitochondrion	11.86	82.28
CDY15727	Canola	nucleus	66.24	69.94
KRH14043	Soybean	cytosol	68.25	69.91
Bra030030.1-P	Field mustard	nucleus	66.06	69.75
CDY03901	Canola	nucleus	66.24	69.67
AT1G24290.1	Thale cress	nucleus	65.33	68.19
PGSC0003DMT400036771	Potato	nucleus	68.61	64.16
Solyc03g118320.1.1	Tomato	nucleus	68.25	64.15
GSMUA_Achr3P23690_001	Banana	nucleus	45.26	61.85

Protein Annotations

Gene3D:1.10.3710.10	Gene3D:1.10.8.10	Gene3D:1.10.8.60	Gene3D:1.20.272.10	EntrezGene:100258647	wikigene:100258647
Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	InterPro:AAA_assoc_2	InterPro:ATPase_AAA_core	ProteinID:CCB58061
ProteinID:CCB58061.1	InterPro:DNA_pol3_clamp-load_cplx_C	UniProt:F6HTQ0	EMBL:FN596248	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0006139
GO:GO:0006259	GO:GO:0006260	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR015940	EntrezGene:LOC100258647	wikigene:LOC100258647	InterPro:MgsA_C	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF00627	PFAM:PF12002	PFAM:PF16193	PFscan:PS50030	PANTHER:PTHR13779	PANTHER:PTHR13779:SF7
SMART:SM00382	SUPFAM:SSF46934	SUPFAM:SSF48019	SUPFAM:SSF52540	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI00021093C9	ArrayExpress:VIT_03s0017g02320	EnsemblPlantsGene:VIT_03s0017g02320	EnsemblPlants:VIT_03s0017g02320.t01	RefSeq:XP_002264062	RefSeq:XP_002264062.1
RefSeq:XP_010648224.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:19131105..19133186

Molecular Weight (calculated)

59672.9 Da

IEP (calculated)

7.050

GRAVY (calculated)

-0.298

Length

548 amino acids

Sequence
(BLAST)

001: MEREQLLSMG FPDDLASQAL AATGGKSILK ATEWILGRNK SDSQTPDENP NSSPSPSPFQ PKLDRFFHFQ SKPSNPPQIQ KQHCDTPSLP SPPSKRLRLE
101: AENSPHQPLS ERMRPRTVDD VVGQDHLLSH KSLLRSAIDS NRLPSIILWG PPGTGKTSIA KAIVNSSSQP SSYRFVSLSA VTAGVKDVRD VVEEARKIKV
201: SKNMNSKRTL LFVDEVHRFN KSQQDSFLPV IEDGSIVFIG ATTENPSFHL ITPLLSRCRV LTLNPLQPSH VASLLNRAVA DTGRGLAWSV GGASIEVSDD
301: AIDFLSSHCD GDARVALNAL EISAVTAAAR VPIKQSVCKV EEKEHGENLV ENNGVGSSQV TTVTLDDAKE ALQSKHLAYD KAGEEHYNLI SALHKSMRGS
401: DADASIYWLA RMLEGGEEPL YIARRLIRFA SEDVGLADPI ALVQAVACCQ ACHFLGMPEC NVNLAQCVAY LALAPKSVSV YRAILAAQEV VRESVGQNEG
501: VPLHLRNAPT KLMKELGYGK GYIYPPDNPS SSTQNYLPPS LQGYKFLN

Best Arabidopsis Sequence Match ( AT1G24290.1 )
(BLAST)

001: MEQLVSMGFS SDLAAEALTA TGGDSIQKAT DWILSHRSSP QSTATLQPKL DRFLRLHPKA LAPAMGDDSS KRPNPKTQIH VAADDSNKRH KLSSSSHRQH
101: QPLSERMRPR TLDDVVGQDH LLSPSSLLRS AVESNRLPSI VFWGPPGTGK TSIAKSLINS SKDPSLYRFV SLSAVTSGVK DVRDAVESAK RLNLEGRKRT
201: VLFMDEVHRF NKSQQDTFLP VIEDGSILFI GATTENPSFH LITPLLSRCR VLTLNPLKPN HVETLLRRAV DDSERGLPNS VEVDDSVIEF LANNCDGDAR
301: VALNALEISA TMATTRAGTD AVVSIDDAKE ALQCKHLAYD KAGEQHYNLI SALHKSMRGG DANAAIYWLA RMLEGGEEPL YIARRLIRFA SEDIGLADPS
401: ALTQAVACYQ ASHFLGMPEC NVILAQCTAY LALAPKSIAV YRAIGAAQKV VKDSVGQNEG VPLHLRNAPT KLMKELGYGK EYIYPPSDPS SAAGQTYLPP
501: SLLHHKFLEW PEGASGDFQD QEHRL

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:O48696]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.