Factsheet for Solyc05g014370.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008370.2.1
Solyc01g010080.2.1
Solyc01g011000.2.1
Solyc01g096520.2.1
Solyc01g106400.2.1
Solyc01g111910.2.1
Solyc02g031860.2.1
Solyc02g031910.2.1
Solyc02g036360.1.1
Solyc02g081200.1.1
Solyc03g043720.2.1
Solyc03g112660.2.1
Solyc03g115650.2.1
Solyc03g118320.1.1
Solyc03g120810.2.1
Solyc04g005510.2.1
Solyc04g081030.2.1
Solyc05g006890.1.1
Solyc05g014370.2.1
Solyc05g056150.2.1
Solyc06g051040.2.1
Solyc06g065200.2.1
Solyc06g065520.2.1
Solyc07g008340.2.1
Solyc07g042010.2.1
Solyc07g054690.1.1
Solyc08g005070.2.1
Solyc08g007990.2.1
Solyc08g068000.1.1
Solyc08g075360.1.1
Solyc08g076920.2.1
Solyc09g010190.2.1
Solyc09g083420.2.1
Solyc10g047930.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25980.1	Solyc03g118320.1.1	AT1G24290.1	20706207
AT3G25980.1	Solyc01g011000.2.1	AT1G26630.1	20706207
AT3G25980.1	Solyc03g115650.2.1	AT1G26630.1	20706207
AT3G25980.1	Solyc04g005510.2.1	AT1G26630.1	20706207
AT3G25980.1	Solyc05g006890.1.1	AT1G26630.1	20706207
AT3G25980.1	Solyc09g083420.2.1	AT1G56290.1	20706207
AT3G25980.1	Solyc02g036360.1.1	AT1G62390.1	20706207
AT3G25980.1	Solyc02g081200.1.1	AT1G62390.1	20706207
AT3G25980.1	Solyc06g065200.2.1	AT2G17350.1	20706207
AT3G25980.1	Solyc03g043720.2.1	AT2G22640.1	25262777
AT3G25980.1	Solyc02g031860.2.1	AT2G35050.1	20706207
AT3G25980.1	Solyc02g031910.2.1	AT2G35050.1	20706207
AT3G25980.1	Solyc09g010190.2.1	AT2G36130.1	20706207
AT3G25980.1	Solyc05g056150.2.1	AT2G36230.1	20706207
AT3G25980.1	Solyc01g096520.2.1	AT2G38730.1	20706207
AT3G25980.1	Solyc01g008370.2.1	AT3G11270.1	20706207
AT3G25980.1	Solyc06g065520.2.1	AT3G11830.1	20706207
AT3G25980.1	Solyc03g120810.2.1	AT3G16060.1	20706207
AT3G25980.1	Solyc05g014370.2.1	AT3G25980.1	25262777
AT3G25980.1	Solyc04g081030.2.1	AT3G49990.1	20706207
AT3G25980.1	Solyc01g106400.2.1	AT4G04800.1	20706207
AT3G25980.1	Solyc10g047930.1.1	AT4G04800.1	20706207
AT3G25980.1	Solyc07g008340.2.1	AT4G19210.1	20706207
AT3G25980.1	Solyc08g075360.1.1	AT4G19210.1	20706207
AT3G25980.1	Solyc01g106400.2.1	AT4G21860.1	20706207
AT3G25980.1	Solyc10g047930.1.1	AT4G21860.1	20706207
AT3G25980.1	Solyc03g112660.2.1	AT4G24680.1	20706207
AT3G25980.1	Solyc07g054690.1.1	AT4G28230.1	20706207
AT3G25980.1	Solyc01g010080.2.1	AT4G32650.1	20706207
AT3G25980.1	Solyc08g068000.1.1	AT4G32650.1	20706207
AT3G25980.1	Solyc07g042010.2.1	AT4G35740.1	20706207
AT3G25980.1	Solyc01g111910.2.1	AT4G38440.1	20706207
AT3G25980.1	Solyc06g051040.2.1	AT5G05510.1	25262777
AT3G25980.1	Solyc08g007990.2.1	AT5G41190.1	20706207
AT3G25980.1	Solyc08g005070.2.1	AT5G46750.1	20706207
AT3G25980.1	Solyc08g076920.2.1	AT5G46750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400045025	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	98.56	98.56
GSMUA_Achr6P21190_001	Banana	cytosol, nucleus, plastid	36.54	91.57
VIT_01s0010g02430.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	90.87	91.3
KRH31421	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	90.87	91.3
KRG97470	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	90.38	90.82
Bra017340.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	87.5	87.08
CDY04187	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	87.5	87.08
Os04t0486500-01	Rice	mitochondrion	86.54	86.96
CDY39177	Canola	cytosol	87.02	86.6
AT3G25980.1	Thale cress	cytosol	86.54	86.12
EES12410	Sorghum	mitochondrion	83.17	83.57
TraesCS2B01G363300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	81.25	81.64
TraesCS2A01G320000.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	80.77	81.16
TraesCS2D01G343300.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	80.29	80.68
CDX83576	Canola	extracellular, golgi	53.37	79.29
Zm00001d025721_P001	Maize	mitochondrion	79.33	76.74
KRH08024	Soybean	cytosol	36.06	70.09
Bra025176.1-P	Field mustard	cytosol	30.77	67.37
HORVU2Hr1G084050.1	Barley	plastid	81.25	62.13
Zm00001d003249_P001	Maize	mitochondrion	72.12	31.51

Protein Annotations

EnsemblPlants:Solyc05g014370.2.1	EnsemblPlantsGene:Solyc05g014370.2	Gene3D:3.30.900.10	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:HORMA_dom	InterPro:HORMA_dom_sf	InterPro:IPR003511	InterPro:IPR036570
InterPro:Mad2	PANTHER:PTHR11842	PANTHER:PTHR11842:SF11	PFAM:PF02301	PFscan:PS50815	SUPFAM:SSF56019
UniParc:UPI00027664C4	UniProt:K4BYF6	MapMan:13.3.5.5.4	:	:	:

Description

No Description!

Coordinates

chr5:-:8214092..8215990

Molecular Weight (calculated)

23596.2 Da

IEP (calculated)

4.667

GRAVY (calculated)

-0.189

Length

208 amino acids

Sequence
(BLAST)

001: MASRTASKDI ITLRGSAAIV SEYFGYAANS ILYNRGVYPE ESFKKVKKYG LTMLLTEDEG VKTFVSNLTA QLAEWLETGK LQRVVLVIMS KASGEVLERW
101: NFSIETDSEV VQKGVSREKS DKEIMREIQA IMRQIASSIT YLPCLEEPCV FDVLAYTDMD VAVPFTWIES DPKLIANPQM VKLHSFDTKI HKVDTLVSYK
201: NDDEWDES

Best Arabidopsis Sequence Match ( AT3G25980.1 )
(BLAST)

001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE

Arabidopsis Description

MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.