Factsheet for Solyc01g011000.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 20496099
nucleus: 25464976
plastid: 26371478
extracellular: 29876421

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	99.37	99.37
PGSC0003DMT400068977	Potato	cytosol	97.48	97.48
Solyc05g006890.1.1	Tomato	cytosol, nucleus	97.48	97.48
TraesCS5A01G104800.1	Wheat	cytosol	96.23	95.62
KRH63282	Soybean	nucleus	93.08	92.5
Os12t0507200-01	Rice	plasma membrane, plastid	93.08	92.5
KRH56874	Soybean	cytosol	93.08	92.5
KRH54605	Soybean	cytosol	93.08	92.5
KRH03532	Soybean	cytosol	93.08	92.5
VIT_17s0000g06670.t01	Wine grape	cytosol	92.45	92.45
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	91.82	91.25
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	90.57	90.0
AT1G13950.1	Thale cress	cytosol	89.31	89.87
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	91.19	89.51
Os03t0758800-01	Rice	nucleus, plasma membrane	90.57	89.44
Solyc12g010060.1.1	Tomato	nucleus	89.94	89.38
KXG37504	Sorghum	cytosol	89.94	89.38
TraesCS5D01G116200.2	Wheat	cytosol	94.97	87.28
KXG36613	Sorghum	cytosol	87.42	86.88
KRH00098	Soybean	cytosol	42.77	86.08
AT1G69410.1	Thale cress	cytosol	85.53	86.08
Os07t0112800-01	Rice	nucleus	85.53	83.95
KXG34269	Sorghum	cytosol	83.65	82.61
TraesCS2D01G190400.1	Wheat	cytosol	81.76	81.25
TraesCS2A01G262500.1	Wheat	cytosol	80.5	79.5
TraesCS2D01G261500.1	Wheat	nucleus	80.5	79.5
AT1G26630.1	Thale cress	cytosol	77.36	77.36
KRH00097	Soybean	cytosol	35.85	77.03
HORVU5Hr1G028360.3	Barley	mitochondrion	95.6	76.0
HORVU2Hr1G063210.3	Barley	cytosol	77.99	72.09
TraesCS2A01G182600.1	Wheat	mitochondrion	66.67	60.92
GSMUA_Achr6P07860_001	Banana	nucleus	20.75	9.22

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EMBL:AF296085	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like
InterPro:IPR014722	InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673
PANTHER:PTHR11673:SF22	UniProt:Q9AXQ4	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249
EnsemblPlantsGene:Solyc01g011000.2	EnsemblPlants:Solyc01g011000.2.1	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000012D388	:	:	:	:	:

Description

Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9AXQ4]

Coordinates

chr1:-:6848050..6851207

Molecular Weight (calculated)

17372.5 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.470

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHQFES KADAGASKTY PQQAGTIRKN GYIVIKGRPC KVVEVSTSKT GKHGHAKCHF VAIDIFTGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTDNGN TKDDLRLPTD ENLLSLIKDG FAEGKDLVVS VMSAMGEEQI NALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.