Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G104800.1 | Wheat | cytosol | 91.77 | 90.62 |
| PGSC0003DMT400068977 | Potato | cytosol | 90.51 | 89.94 |
| PGSC0003DMT400007325 | Potato | cytosol, mitochondrion | 90.51 | 89.94 |
| Os12t0507200-01 | Rice | plasma membrane, plastid | 90.51 | 89.38 |
| VIT_17s0000g06670.t01 | Wine grape | cytosol | 89.87 | 89.31 |
| Solyc04g005510.2.1 | Tomato | cytosol, nucleus, plastid | 89.87 | 89.31 |
| Solyc01g011000.2.1 | Tomato | extracellular | 89.87 | 89.31 |
| KXG37504 | Sorghum | cytosol | 89.24 | 88.12 |
| Os07t0597000-01 | Rice | cytosol, extracellular, plasma membrane | 89.24 | 88.12 |
| PGSC0003DMT400063132 | Potato | cytosol | 87.97 | 87.42 |
| Solyc05g006890.1.1 | Tomato | cytosol, nucleus | 87.97 | 87.42 |
| AT1G69410.1 | Thale cress | cytosol | 87.34 | 87.34 |
| Os03t0758800-01 | Rice | nucleus, plasma membrane | 87.97 | 86.34 |
| Solyc03g115650.2.1 | Tomato | cytosol, extracellular, nucleus | 87.97 | 85.8 |
| KXG36613 | Sorghum | cytosol | 84.81 | 83.75 |
| TraesCS5D01G116200.2 | Wheat | cytosol | 91.14 | 83.24 |
| Os07t0112800-01 | Rice | nucleus | 84.81 | 82.72 |
| KXG34269 | Sorghum | cytosol | 84.18 | 82.61 |
| TraesCS2D01G190400.1 | Wheat | cytosol | 81.65 | 80.62 |
| AT1G26630.1 | Thale cress | cytosol | 81.01 | 80.5 |
| TraesCS2A01G262500.1 | Wheat | cytosol | 81.65 | 80.12 |
| TraesCS2D01G261500.1 | Wheat | nucleus | 81.65 | 80.12 |
| HORVU5Hr1G028360.3 | Barley | mitochondrion | 92.41 | 73.0 |
| HORVU2Hr1G063210.3 | Barley | cytosol | 78.48 | 72.09 |
| TraesCS2A01G182600.1 | Wheat | mitochondrion | 68.35 | 62.07 |
Protein Annotations
| MapMan:17.5.3.1 | Gene3D:2.30.30.30 | Gene3D:2.40.50.140 | EntrezGene:837955 | UniProt:A0A178WBN7 | ProteinID:AAD39281.1 |
| ProteinID:AAF79401.1 | ProteinID:AEE29088.1 | EMBL:AF296082 | ArrayExpress:AT1G13950 | EnsemblPlantsGene:AT1G13950 | RefSeq:AT1G13950 |
| TAIR:AT1G13950 | RefSeq:AT1G13950-TAIR-G | EnsemblPlants:AT1G13950.1 | TAIR:AT1G13950.1 | EMBL:AY063780 | EMBL:AY117272 |
| Symbol:EIF-5A | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003743 | GO:GO:0003746 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006413 | GO:GO:0006452 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0010089 | GO:GO:0016043 | GO:GO:0019538 |
| GO:GO:0043022 | GO:GO:0045901 | GO:GO:0045905 | InterPro:IF5A-like | InterPro:IPR014722 | InterPro:NA-bd_OB-fold |
| RefSeq:NP_172848.1 | ProteinID:OAP15768.1 | PFAM:PF01287 | PIRSF:PIRSF003025 | PO:PO:0000013 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0005352 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00302 | PANTHER:PTHR11673 |
| PANTHER:PTHR11673:SF22 | UniProt:Q9XI91 | InterPro:Rib_L2_dom2 | SMART:SM01376 | SUPFAM:SSF50104 | SUPFAM:SSF50249 |
| TIGRFAMs:TIGR00037 | InterPro:Trans_elong_IF5A_hypusine_site | InterPro:Transl_elong_IF5A_C | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI00000017DA | : |
Description
ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
Coordinates
chr1:+:4773434..4774935
Molecular Weight (calculated)
17361.3 Da
IEP (calculated)
5.532
GRAVY (calculated)
-0.570
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.