Factsheet for Os07t0112800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

nucleus: 26035336

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	90.74	91.88
Solyc12g010060.1.1	Tomato	nucleus	90.12	91.25
PGSC0003DMT400020252	Potato	cytosol	89.51	90.62
Os03t0758800-01	Rice	nucleus, plasma membrane	89.51	90.06
Os12t0507200-01	Rice	plasma membrane, plastid	88.89	90.0
VIT_17s0000g06670.t01	Wine grape	cytosol	88.27	89.94
KXG34269	Sorghum	cytosol	88.89	89.44
VIT_11s0016g00020.t01	Wine grape	cytosol	87.65	88.75
VIT_04s0008g06540.t01	Wine grape	cytosol	87.65	88.75
Zm00001d007940_P002	Maize	cytosol, extracellular	87.04	88.12
PGSC0003DMT400028926	Potato	cytosol	87.04	88.12
PGSC0003DMT400063132	Potato	cytosol	86.42	88.05
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	86.42	87.5
KRH74954	Soybean	cytosol	85.8	87.42
KRH70826	Soybean	cytosol	85.19	86.79
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	86.42	86.42
KRH03532	Soybean	cytosol	85.19	86.25
KRH54605	Soybean	cytosol	85.19	86.25
KRH56874	Soybean	cytosol	85.19	86.25
KRH63282	Soybean	nucleus	85.19	86.25
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	84.57	86.16
PGSC0003DMT400068977	Potato	cytosol	84.57	86.16
KRH72302	Soybean	cytosol	84.57	85.62
Solyc01g011000.2.1	Tomato	extracellular	83.95	85.53
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	83.95	85.53
Solyc05g006890.1.1	Tomato	cytosol, nucleus	83.33	84.91
AT1G13950.1	Thale cress	cytosol	82.72	84.81
KRH00098	Soybean	cytosol	41.36	84.81
TraesCS2D01G261500.1	Wheat	nucleus	83.95	84.47
TraesCS2B01G279600.1	Wheat	cytosol	83.95	84.47
TraesCS2A01G262500.1	Wheat	cytosol	83.95	84.47
AT1G69410.1	Thale cress	cytosol	79.63	81.65
Bra004379.1-P	Field mustard	cytosol	79.63	81.65
CDY71729	Canola	cytosol	79.63	81.65
CDY40919	Canola	cytosol	79.63	81.65
CDX95937	Canola	cytosol	79.63	81.65
Bra024702.1-P	Field mustard	cytosol	79.01	80.5
AT1G26630.1	Thale cress	cytosol	77.78	79.25
HORVU2Hr1G063210.3	Barley	cytosol	80.86	76.16
CDY13072	Canola	cytosol	37.04	66.67
KRH00097	Soybean	cytosol	30.25	66.22
CDY03674	Canola	cytosol	41.36	60.91
Bra007992.1-P	Field mustard	plastid	22.22	57.14
CDY36262	Canola	cytosol	29.63	28.92
CDX83676	Canola	cytosol	30.86	28.74
KRH03058	Soybean	vacuole	64.2	26.46
KRH64023	Soybean	plastid	17.28	19.58

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EntrezGene:4342241	EMBL:AK058206	ProteinID:BAC16153.1
ProteinID:BAC22294.1	ProteinID:BAF20660.1	ProteinID:BAS99779.1	ProteinID:EAZ38468.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like
InterPro:IPR014722	InterPro:NA-bd_OB-fold	EnsemblPlantsGene:Os07g0112800	EnsemblPlants:Os07t0112800-01	PFAM:PF01287	PIRSF:PIRSF003025
ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	UniProt:Q8GRL5	InterPro:Rib_L2_dom2	SMART:SM01376
SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI00000AE598	RefSeq:XP_015647652.1	SEG:seg	:	:	:

Description

Similar to Eukaryotic translation initiation factor 5A-4 (eIF-5A-4). (Os07t0112800-01)

Coordinates

chr7:+:703009..705502

Molecular Weight (calculated)

17766.9 Da

IEP (calculated)

5.556

GRAVY (calculated)

-0.578

Length

162 amino acids

Sequence
(BLAST)

001: MSDSEEHHFE SKADAGASKT YPQQAGTIRK NGYIVIKNRP CKVVEVSTSK TGKHGHAKCH FVGIDIFNGK KLEDIVPSSH NCDVPHVDRT DYQLIDISED
101: GFVSLLTESG NTKDDLRLPT DDTLTNQIKN GFGEEGKDMI LTVMSAMGEE QICAVKEIGA KN

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.