Factsheet for VIT_04s0008g06540.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00020.t01	Wine grape	cytosol	93.12	93.12
VIT_17s0000g06670.t01	Wine grape	cytosol	92.5	93.08
Os03t0758800-01	Rice	nucleus, plasma membrane	92.5	91.93
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.25	91.25
Os12t0507200-01	Rice	plasma membrane, plastid	90.62	90.62
KXG37504	Sorghum	cytosol	90.62	90.62
TraesCS5A01G104800.1	Wheat	cytosol	88.12	88.12
Os07t0112800-01	Rice	nucleus	88.75	87.65
KXG36613	Sorghum	cytosol	86.25	86.25
TraesCS2D01G190400.1	Wheat	cytosol	85.62	85.62
TraesCS2A01G262500.1	Wheat	cytosol	83.75	83.23
TraesCS2D01G261500.1	Wheat	nucleus	83.75	83.23
KXG34269	Sorghum	cytosol	83.75	83.23
TraesCS5D01G116200.2	Wheat	cytosol	87.5	80.92
HORVU2Hr1G063210.3	Barley	cytosol	80.0	74.42
HORVU5Hr1G028360.3	Barley	mitochondrion	87.5	70.0
TraesCS2A01G182600.1	Wheat	mitochondrion	70.0	64.37

Protein Annotations

EntrezGene:100247352	wikigene:100247352	MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	UniProt:A5C3I9
EMBL:AM480917	ProteinID:CAN62058	ProteinID:CAN62058.1	ProteinID:CBI21134	ProteinID:CBI21134.3	EMBL:FN595231
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like
InterPro:IPR014722	EntrezGene:LOC100247352	wikigene:LOC100247352	InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025
ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF16	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGR:TC53535	TIGR:TC63192	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00015224BF	ArrayExpress:VIT_04s0008g06540	EnsemblPlantsGene:VIT_04s0008g06540	EnsemblPlants:VIT_04s0008g06540.t01	unigene:Vvi.26352
RefSeq:XP_002285505	RefSeq:XP_002285505.1	:	:	:	:

Description

Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A5C3I9]

Coordinates

chr4:+:6510532..6513778

Molecular Weight (calculated)

17413.6 Da

IEP (calculated)

5.865

GRAVY (calculated)

-0.441

Length

160 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KADAGASKTY PQQAGAIRKN GYIVIKARPC KVVEVSTSKT GKHGHAKCHF VGIDIFNGKK LEDIVPSSHN CDVPHVTRTD YQLIDISEDG
101: FVSLLTDSGG TKDDLRLPTD DNLLTQIKDG FAEGKDLVVT VMTAMGEEQI CALKDIGPKN

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.