CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P11110_001	Banana	cytosol	11.25	94.74
Os03t0758800-01	Rice	nucleus, plasma membrane	95.0	94.41
VIT_17s0000g06670.t01	Wine grape	cytosol	91.88	92.45
KRH74954	Soybean	cytosol	91.88	92.45
KRH70826	Soybean	cytosol	91.88	92.45
PGSC0003DMT400028926	Potato	cytosol	91.25	91.25
KRH72302	Soybean	cytosol	91.25	91.25
VIT_04s0008g06540.t01	Wine grape	cytosol	90.62	90.62
KRH63282	Soybean	nucleus	90.62	90.62
KRH56874	Soybean	cytosol	90.62	90.62
KRH54605	Soybean	cytosol	90.62	90.62
KRH03532	Soybean	cytosol	90.62	90.62
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	90.0	90.57
KXG36613	Sorghum	cytosol	90.0	90.0
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	90.0	90.0
Solyc01g011000.2.1	Tomato	extracellular	89.38	89.94
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	89.38	89.94
Solyc12g010060.1.1	Tomato	nucleus	89.38	89.38
VIT_11s0016g00020.t01	Wine grape	cytosol	89.38	89.38
Solyc05g006890.1.1	Tomato	cytosol, nucleus	88.75	89.31
PGSC0003DMT400068977	Potato	cytosol	88.75	89.31
PGSC0003DMT400063132	Potato	cytosol	88.75	89.31
AT1G13950.1	Thale cress	cytosol	88.12	89.24
PGSC0003DMT400020252	Potato	cytosol	88.75	88.75
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	88.75	87.65
CDY71729	Canola	cytosol	85.0	86.08
CDY40919	Canola	cytosol	85.0	86.08
CDX95937	Canola	cytosol	85.0	86.08
Bra004379.1-P	Field mustard	cytosol	85.0	86.08
KXG34269	Sorghum	cytosol	86.25	85.71
AT1G69410.1	Thale cress	cytosol	84.38	85.44
KRH00098	Soybean	cytosol	40.62	82.28
Bra024702.1-P	Field mustard	cytosol	80.62	81.13
AT1G26630.1	Thale cress	cytosol	78.75	79.25
KRH00097	Soybean	cytosol	36.25	78.38
CDY13072	Canola	cytosol	39.38	70.0
CDY03674	Canola	cytosol	45.0	65.45
Bra007992.1-P	Field mustard	plastid	22.5	57.14
CDY36262	Canola	cytosol	31.88	30.72
KRH03058	Soybean	vacuole	70.62	28.75
CDX83676	Canola	cytosol	30.62	28.16
KRH64023	Soybean	plastid	16.88	18.88

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	UniProt:A0A1B6QHV2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	EnsemblPlants:KXG37504
ProteinID:KXG37504	ProteinID:KXG37504.1	InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302
PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	EnsemblPlantsGene:SORBI_3001G083200	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001C80BE1

Description

hypothetical protein

Coordinates

chr1:-:6437197..6439372

Molecular Weight (calculated)

17475.6 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.471

Length

160 amino acids

Sequence
(BLAST)

001: MSDSEEHHFE SKADAGASKT YPQQAGTVRK NGYIVIKNRP CKVVEVSTSK TGKHGHAKCH FVAIDIFNGK KLEDIVPSSH NCDIPHVNRT DYQLIDISED
101: GFVSLLTESG GTKDDLKLPT DETLLTQIKD GFSEGKDLIV SVMSAMGEEQ ICALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.