CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74954	Soybean	cytosol	98.74	98.74
Os12t0507200-01	Rice	plasma membrane, plastid	93.71	93.12
Os03t0758800-01	Rice	nucleus, plasma membrane	93.08	91.93
KXG37504	Sorghum	cytosol	92.45	91.88
TraesCS5A01G104800.1	Wheat	cytosol	91.82	91.25
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.82	91.25
KRH03532	Soybean	cytosol	91.19	90.62
KRH54605	Soybean	cytosol	91.19	90.62
KRH56874	Soybean	cytosol	91.19	90.62
KRH63282	Soybean	nucleus	91.19	90.62
KRH72302	Soybean	cytosol	90.57	90.0
KXG36613	Sorghum	cytosol	86.79	86.25
Os07t0112800-01	Rice	nucleus	86.79	85.19
KRH00098	Soybean	cytosol	42.14	84.81
KXG34269	Sorghum	cytosol	85.53	84.47
TraesCS5D01G116200.2	Wheat	cytosol	91.19	83.81
TraesCS2D01G190400.1	Wheat	cytosol	81.76	81.25
TraesCS2A01G262500.1	Wheat	cytosol	81.76	80.75
TraesCS2D01G261500.1	Wheat	nucleus	81.76	80.75
KRH00097	Soybean	cytosol	35.22	75.68
HORVU2Hr1G063210.3	Barley	cytosol	79.87	73.84
HORVU5Hr1G028360.3	Barley	mitochondrion	91.19	72.5
CDY13072	Canola	cytosol	38.36	67.78
CDY03674	Canola	cytosol	42.77	61.82
TraesCS2A01G182600.1	Wheat	mitochondrion	66.67	60.92
Bra007992.1-P	Field mustard	plastid	22.01	55.56
KRH03058	Soybean	vacuole	71.07	28.75
KRH64023	Soybean	plastid	16.35	18.18

Protein Annotations

EntrezGene:100306157	MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EMBL:ACUP02000809	UniProt:C6ZHS3
EMBL:EU881359	EnsemblPlantsGene:GLYMA_02G112400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0006452	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	EnsemblPlants:KRH70826
ProteinID:KRH70826	ProteinID:KRH70826.1	InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302
PANTHER:PTHR11673	PANTHER:PTHR11673:SF16	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249
TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001B068CB	:

Description

hypothetical protein

Coordinates

chr2:-:10905625..10907687

Molecular Weight (calculated)

17398.6 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.416

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KADAGASKTF PQQAGTIRKN GYIVIKNRPC KVVEVSTSKT GKHGHAKCHF VAIDIFTGKK LEDIVPSSHN CDVPHVNRID YQLIDISEDG
101: FVSLLTETGG TKDDLRLPTD ENLLSQIKDG FAEGKDLVVS VMSSMGEEQI CALKDIGPK

Best Arabidopsis Sequence Match ( AT1G26630.1 )
(BLAST)

001: MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK

Arabidopsis Description

ELF5A-2Eukaryotic translation initiation factor 5A-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.