CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 24385303
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56874	Soybean	cytosol	100.0	100.0
KRH03532	Soybean	cytosol	100.0	100.0
KRH54605	Soybean	cytosol	100.0	100.0
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	93.12	93.71
VIT_17s0000g06670.t01	Wine grape	cytosol	92.5	93.08
Solyc01g011000.2.1	Tomato	extracellular	92.5	93.08
PGSC0003DMT400068977	Potato	cytosol	92.5	93.08
TraesCS5A01G104800.1	Wheat	cytosol	92.5	92.5
KRH74954	Soybean	cytosol	91.88	92.45
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	91.88	92.45
Os12t0507200-01	Rice	plasma membrane, plastid	91.88	91.88
KRH70826	Soybean	cytosol	90.62	91.19
KRH72302	Soybean	cytosol	90.62	90.62
KXG37504	Sorghum	cytosol	90.62	90.62
Solyc05g006890.1.1	Tomato	cytosol, nucleus	90.0	90.57
PGSC0003DMT400063132	Potato	cytosol	90.0	90.57
Os03t0758800-01	Rice	nucleus, plasma membrane	90.62	90.06
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	90.0	90.0
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	90.0	88.89
KRH00098	Soybean	cytosol	43.75	88.61
KRH00097	Soybean	cytosol	40.62	87.84
KXG36613	Sorghum	cytosol	85.62	85.62
Os07t0112800-01	Rice	nucleus	86.25	85.19
KXG34269	Sorghum	cytosol	85.62	85.09
TraesCS5D01G116200.2	Wheat	cytosol	91.25	84.39
TraesCS2D01G190400.1	Wheat	cytosol	81.25	81.25
TraesCS2A01G262500.1	Wheat	cytosol	81.25	80.75
TraesCS2D01G261500.1	Wheat	nucleus	81.25	80.75
HORVU5Hr1G028360.3	Barley	mitochondrion	92.5	74.0
HORVU2Hr1G063210.3	Barley	cytosol	78.75	73.26
TraesCS2A01G182600.1	Wheat	mitochondrion	65.62	60.34
KRH03058	Soybean	vacuole	71.88	29.26
KRH64023	Soybean	plastid	16.25	18.18

Protein Annotations

EntrezGene:100305991	EntrezGene:100499632	EntrezGene:100803862	EntrezGene:100820467	MapMan:17.5.3.1	Gene3D:2.30.30.30
Gene3D:2.40.50.140	EMBL:ACUP02002661	EMBL:ACUP02002798	EMBL:ACUP02003549	EMBL:ACUP02010351	UniProt:C6ZHS4
EMBL:EU881360	EMBL:EU881361	EnsemblPlantsGene:GLYMA_04G165500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0006452
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722
ProteinID:KRH03532.1	ProteinID:KRH54605.1	ProteinID:KRH56874.1	EnsemblPlants:KRH63282	ProteinID:KRH63282	ProteinID:KRH63282.1
InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF16
InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site
InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001B068CC	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:41393620..41396114

Molecular Weight (calculated)

17470.7 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.460

Length

160 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KADAGASKTY PQQAGTIRKN GYIVIKGRPC KVVEVSTSKT GKHGHAKCHF VGIDIFTAKK LEDIVPSSHN CDVPHVNRTD YQLIDIAEDG
101: FLSLLTENGN TKDDLKLPTD ESLLTQIKDG FAEGKDLVVS VMSAMGEEQI CALKDIGPKN

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.