Factsheet for PGSC0003DMT400068977

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	98.11	98.11
Solyc01g011000.2.1	Tomato	extracellular	97.48	97.48
TraesCS5A01G104800.1	Wheat	cytosol	95.6	95.0
PGSC0003DMT400063132	Potato	cytosol	93.08	93.08
KRH03532	Soybean	cytosol	93.08	92.5
KRH54605	Soybean	cytosol	93.08	92.5
KRH56874	Soybean	cytosol	93.08	92.5
KRH63282	Soybean	nucleus	93.08	92.5
Os12t0507200-01	Rice	plasma membrane, plastid	93.08	92.5
VIT_17s0000g06670.t01	Wine grape	cytosol	92.45	92.45
PGSC0003DMT400028926	Potato	cytosol	92.45	91.88
PGSC0003DMT400020252	Potato	cytosol	91.82	91.25
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.82	91.25
AT1G13950.1	Thale cress	cytosol	89.94	90.51
Os03t0758800-01	Rice	nucleus, plasma membrane	89.94	88.82
KXG37504	Sorghum	cytosol	89.31	88.75
TraesCS5D01G116200.2	Wheat	cytosol	94.34	86.71
KXG36613	Sorghum	cytosol	86.79	86.25
AT1G69410.1	Thale cress	cytosol	85.53	86.08
KRH00098	Soybean	cytosol	42.14	84.81
Os07t0112800-01	Rice	nucleus	86.16	84.57
TraesCS2D01G190400.1	Wheat	cytosol	83.02	82.5
KXG34269	Sorghum	cytosol	83.02	81.99
TraesCS2A01G262500.1	Wheat	cytosol	81.76	80.75
TraesCS2D01G261500.1	Wheat	nucleus	81.76	80.75
AT1G26630.1	Thale cress	cytosol	78.62	78.62
KRH00097	Soybean	cytosol	36.48	78.38
HORVU5Hr1G028360.3	Barley	mitochondrion	94.97	75.5
HORVU2Hr1G063210.3	Barley	cytosol	79.25	73.26
TraesCS2A01G182600.1	Wheat	mitochondrion	67.92	62.07
GSMUA_Achr6P07860_001	Banana	nucleus	20.75	9.22

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EMBL:AB004825	ProteinID:ABA46751	ProteinID:ABA46751.1
ProteinID:BAA20878	ProteinID:BAA20878.1	EMBL:DQ200358	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0006452
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722
InterPro:NA-bd_OB-fold	UniProt:P56336	PFAM:PF01287	EnsemblPlantsGene:PGSC0003DMG400026829	PGSC:PGSC0003DMG400026829	EnsemblPlants:PGSC0003DMT400068977
PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376
SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000012D38B	:	:	:	:	:

Description

EIF5A4Eukaryotic translation initiation factor 5A-4 [Source:UniProtKB/Swiss-Prot;Acc:P56336]

Coordinates

chr1:+:51719395..51722322

Molecular Weight (calculated)

17319.4 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.482

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHQFES KADAGASKTY PQQAGTIRKS GYIVIKGRPC KVVEVSTSKT GKHGHAKCHF VAIDIFTGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTDNGN TKDDLRLPTD DSLLSQIKDG FAEGKDLVVS VMSAMGEEQI NALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.