CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03532	Soybean	cytosol	88.61	43.75
KRH54605	Soybean	cytosol	88.61	43.75
KRH56874	Soybean	cytosol	88.61	43.75
KRH63282	Soybean	nucleus	88.61	43.75
KXG34269	Sorghum	cytosol	87.34	42.86
KRH74954	Soybean	cytosol	86.08	42.77
Solyc01g011000.2.1	Tomato	extracellular	86.08	42.77
Os12t0507200-01	Rice	plasma membrane, plastid	86.08	42.5
VIT_17s0000g06670.t01	Wine grape	cytosol	84.81	42.14
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	84.81	42.14
PGSC0003DMT400068977	Potato	cytosol	84.81	42.14
KRH70826	Soybean	cytosol	84.81	42.14
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	84.81	42.14
Solyc05g006890.1.1	Tomato	cytosol, nucleus	84.81	42.14
TraesCS5A01G104800.1	Wheat	cytosol	84.81	41.88
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	84.81	41.88
PGSC0003DMT400063132	Potato	cytosol	83.54	41.51
Os07t0112800-01	Rice	nucleus	84.81	41.36
Os03t0758800-01	Rice	nucleus, plasma membrane	83.54	40.99
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	83.54	40.74
KXG37504	Sorghum	cytosol	82.28	40.62
KRH72302	Soybean	cytosol	82.28	40.62
KXG36613	Sorghum	cytosol	81.01	40.0
TraesCS5D01G116200.2	Wheat	cytosol	84.81	38.73
TraesCS2A01G262500.1	Wheat	cytosol	75.95	37.27
TraesCS2D01G261500.1	Wheat	nucleus	75.95	37.27
TraesCS2D01G190400.1	Wheat	cytosol	73.42	36.25
HORVU5Hr1G028360.3	Barley	mitochondrion	84.81	33.5
TraesCS2A01G182600.1	Wheat	mitochondrion	73.42	33.33
HORVU2Hr1G063210.3	Barley	cytosol	72.15	33.14
KRH03058	Soybean	vacuole	49.37	9.92
KRH64023	Soybean	plastid	10.13	5.59
KRH00097	Soybean	cytosol	2.53	2.7

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	EMBL:ACUP02011379	EnsemblPlantsGene:GLYMA_18G192700	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006414	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	InterPro:IF5A-like	InterPro:IPR014722	UniProt:K7MTC2	EnsemblPlants:KRH00098	ProteinID:KRH00098
ProteinID:KRH00098.1	PANTHER:PTHR11673	PANTHER:PTHR11673:SF16	InterPro:Rib_L2_dom2	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000296B4AE	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:46467123..46467691

Molecular Weight (calculated)

9015.4 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.843

Length

79 amino acids

Sequence
(BLAST)

1: MSDEEHHFES KADASDSKTY PQQASTIHKN DYIVIKGRPY KHDHAKCHFV GIDIFTTKKL EDIVPSSHNC DVPHVNPID

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.