Factsheet for PGSC0003DMT400007325

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	98.74	98.74
PGSC0003DMT400068977	Potato	cytosol	98.11	98.11
Solyc05g006890.1.1	Tomato	cytosol, nucleus	96.86	96.86
TraesCS5A01G104800.1	Wheat	cytosol	96.86	96.25
KRH63282	Soybean	nucleus	93.71	93.12
KRH03532	Soybean	cytosol	93.71	93.12
KRH54605	Soybean	cytosol	93.71	93.12
KRH56874	Soybean	cytosol	93.71	93.12
PGSC0003DMT400028926	Potato	cytosol	93.08	92.5
Os12t0507200-01	Rice	plasma membrane, plastid	93.08	92.5
VIT_17s0000g06670.t01	Wine grape	cytosol	92.45	92.45
PGSC0003DMT400063132	Potato	cytosol	91.82	91.82
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.82	91.25
AT1G13950.1	Thale cress	cytosol	89.94	90.51
Os03t0758800-01	Rice	nucleus, plasma membrane	91.19	90.06
KXG37504	Sorghum	cytosol	90.57	90.0
PGSC0003DMT400020252	Potato	cytosol	89.94	89.38
TraesCS5D01G116200.2	Wheat	cytosol	95.6	87.86
KXG36613	Sorghum	cytosol	87.42	86.88
AT1G69410.1	Thale cress	cytosol	85.53	86.08
KRH00098	Soybean	cytosol	42.14	84.81
Os07t0112800-01	Rice	nucleus	86.16	84.57
KXG34269	Sorghum	cytosol	84.28	83.23
TraesCS2D01G190400.1	Wheat	cytosol	82.39	81.88
TraesCS2A01G262500.1	Wheat	cytosol	81.76	80.75
TraesCS2D01G261500.1	Wheat	nucleus	81.76	80.75
KRH00097	Soybean	cytosol	37.11	79.73
AT1G26630.1	Thale cress	cytosol	77.99	77.99
HORVU5Hr1G028360.3	Barley	mitochondrion	96.23	76.5
HORVU2Hr1G063210.3	Barley	cytosol	78.62	72.67
TraesCS2A01G182600.1	Wheat	mitochondrion	67.3	61.49
GSMUA_Achr6P07860_001	Banana	nucleus	20.75	9.22

Protein Annotations

EntrezGene:102587998	MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	UniProt:M0ZST5
InterPro:NA-bd_OB-fold	PFAM:PF01287	EnsemblPlantsGene:PGSC0003DMG400002819	PGSC:PGSC0003DMG400002819	EnsemblPlants:PGSC0003DMT400007325	PIRSF:PIRSF003025
ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000295AD49
RefSeq:XP_006344253.1	:	:	:	:	:

Description

Eukaryotic translation initiation factor 5A-4 [Source:PGSC_GENE;Acc:PGSC0003DMG400002819]

Coordinates

chr4:+:165015..167802

Molecular Weight (calculated)

17374.5 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.485

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHQFES KADAGASKTY PQQAGTIRKN GYIVIKARPC KVVEVSTSKT GKHGHAKCHF VAIDIFTGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTDNGN TKDDLRLPTD ESLLSQIKDG FAEGKDLVVS VMSAMGEEQI NALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.