Factsheet for Os07t0597000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 26072143
plasma membrane: 27800704

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0507200-01	Rice	plasma membrane, plastid	96.25	96.25
VIT_17s0000g06670.t01	Wine grape	cytosol	93.12	93.71
Os03t0758800-01	Rice	nucleus, plasma membrane	93.75	93.17
VIT_11s0016g00020.t01	Wine grape	cytosol	92.5	92.5
PGSC0003DMT400028926	Potato	cytosol	92.5	92.5
PGSC0003DMT400068977	Potato	cytosol	91.25	91.82
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	91.25	91.82
KRH70826	Soybean	cytosol	91.25	91.82
Zm00001d022042_P006	Maize	cytosol	91.25	91.25
Zm00001d006760_P001	Maize	cytosol	91.25	91.25
VIT_04s0008g06540.t01	Wine grape	cytosol	91.25	91.25
Solyc12g010060.1.1	Tomato	nucleus	91.25	91.25
PGSC0003DMT400020252	Potato	cytosol	91.25	91.25
KRH74954	Soybean	cytosol	90.62	91.19
Os07t0112800-01	Rice	nucleus	91.88	90.74
KXG36613	Sorghum	cytosol	90.62	90.62
KRH72302	Soybean	cytosol	90.62	90.62
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	90.62	90.62
PGSC0003DMT400063132	Potato	cytosol	90.0	90.57
Solyc01g011000.2.1	Tomato	extracellular	90.0	90.57
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	90.0	90.57
KRH63282	Soybean	nucleus	90.0	90.0
KRH56874	Soybean	cytosol	90.0	90.0
KRH54605	Soybean	cytosol	90.0	90.0
KRH03532	Soybean	cytosol	90.0	90.0
Solyc05g006890.1.1	Tomato	cytosol, nucleus	89.38	89.94
AT1G13950.1	Thale cress	cytosol	88.12	89.24
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	90.0	88.89
TraesCS2D01G190400.1	Wheat	cytosol	85.0	85.0
CDX95937	Canola	cytosol	83.75	84.81
Bra004379.1-P	Field mustard	cytosol	83.75	84.81
KRH00098	Soybean	cytosol	41.88	84.81
CDY40919	Canola	cytosol	83.75	84.81
CDY71729	Canola	cytosol	83.75	84.81
AT1G69410.1	Thale cress	cytosol	83.12	84.18
Bra024702.1-P	Field mustard	cytosol	81.25	81.76
AT1G26630.1	Thale cress	cytosol	78.75	79.25
KRH00097	Soybean	cytosol	35.0	75.68
CDY13072	Canola	cytosol	38.75	68.89
TraesCS2B01G209100.1	Wheat	cytosol, mitochondrion	85.0	68.0
TraesCS2A01G182600.1	Wheat	mitochondrion	70.0	64.37
CDY03674	Canola	cytosol	43.12	62.73
Bra007992.1-P	Field mustard	plastid	23.75	60.32
KRH03058	Soybean	vacuole	69.38	28.24
CDX83676	Canola	cytosol	30.62	28.16
CDY36262	Canola	cytosol	28.75	27.71
KRH64023	Soybean	plastid	17.5	19.58

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EntrezGene:4343796	EMBL:AK062134	ProteinID:BAC55704.1
ProteinID:BAF22088.1	ProteinID:BAT02483.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0006452	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	InterPro:NA-bd_OB-fold
EnsemblPlantsGene:Os07g0597000	EnsemblPlants:Os07t0597000-01	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673
PANTHER:PTHR11673:SF22	UniProt:Q84ZK1	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249
TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000000454C	RefSeq:XP_015646952.1

Description

Similar to Eukaryotic translation initiation factor 5A (eIF-5A). (Os07t0597000-01)

Coordinates

chr7:-:24317702..24320963

Molecular Weight (calculated)

17458.6 Da

IEP (calculated)

6.147

GRAVY (calculated)

-0.474

Length

160 amino acids

Sequence
(BLAST)

001: MSDSEEHHFE SKADAGASKT YPQQAGTIRK NGYIVIKNRP CKVVEVSTSK TGKHGHAKCH FVAIDIFNGK KLEDIVPSSH NCDVPHVNRT EYQLIDISED
101: GFVSLLTESG NTKDDLRLPT DDSLLGQIKT GFGEGKDLVV TVMSAMGEEQ ICALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.