Factsheet for Bra024702.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G26630.1	Thale cress	cytosol	89.94	89.94
Bra004379.1-P	Field mustard	cytosol	86.79	87.34
Os12t0507200-01	Rice	plasma membrane, plastid	81.76	81.25
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	81.76	81.25
KXG37504	Sorghum	cytosol	81.13	80.62
TraesCS2D01G261500.1	Wheat	nucleus	81.13	80.12
KXG34269	Sorghum	cytosol	81.13	80.12
TraesCS2A01G262500.1	Wheat	cytosol	81.13	80.12
Os03t0758800-01	Rice	nucleus, plasma membrane	81.13	80.12
TraesCS5A01G104800.1	Wheat	cytosol	80.5	80.0
Os07t0112800-01	Rice	nucleus	80.5	79.01
TraesCS2D01G190400.1	Wheat	cytosol	77.99	77.5
KXG36613	Sorghum	cytosol	77.99	77.5
TraesCS5D01G116200.2	Wheat	cytosol	80.5	73.99
HORVU2Hr1G063210.3	Barley	cytosol	77.99	72.09
HORVU5Hr1G028360.3	Barley	mitochondrion	80.5	64.0
TraesCS2A01G182600.1	Wheat	mitochondrion	64.15	58.62
Bra007992.1-P	Field mustard	plastid	20.75	52.38
CDY36262	Canola	cytosol	34.59	33.13
CDX83676	Canola	cytosol	34.59	31.61
KRH64023	Soybean	plastid	13.84	15.38
GSMUA_Achr6P07860_001	Banana	nucleus	22.01	9.78

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra024702	EnsemblPlants:Bra024702.1	EnsemblPlants:Bra024702.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003746	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006412	GO:GO:0006413
GO:GO:0006452	GO:GO:0006950	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219
GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009611	GO:GO:0009617	GO:GO:0009987
GO:GO:0012501	GO:GO:0016043	GO:GO:0019538	GO:GO:0034050	GO:GO:0042742	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	GO:GO:0046686	InterPro:IF5A-like	InterPro:IPR014722	UniProt:M4E7E7
InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22
InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site
InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002542808	SEG:seg	:	:

Description

AT1G26630 (E=2e-077) FBR12, ATELF5A-2, ELF5A-2 | FBR12 (FUMONISIN B1-RESISTANT12); translation initiation factor

Coordinates

chrA09:+:23424575..23425544

Molecular Weight (calculated)

17068.2 Da

IEP (calculated)

6.077

GRAVY (calculated)

-0.390

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHHFES SDAGASKPYP QKAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRIDY QLIDISEDGF
101: VSLLTDSGGT KDDLKLPTDD SLSALMKSGF EEGKDVVVSV MSSMGEEQIC AVKEVGGGK

Best Arabidopsis Sequence Match ( AT1G26630.1 )
(BLAST)

001: MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK

Arabidopsis Description

ELF5A-2Eukaryotic translation initiation factor 5A-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.