Factsheet for Bra004379.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95937	Canola	cytosol	99.37	99.37
CDY40919	Canola	cytosol	99.37	99.37
CDY71729	Canola	cytosol	98.73	98.73
AT1G69410.1	Thale cress	cytosol	96.84	96.84
Bra024702.1-P	Field mustard	cytosol	87.34	86.79
TraesCS5A01G104800.1	Wheat	cytosol	86.71	85.62
Os12t0507200-01	Rice	plasma membrane, plastid	86.08	85.0
KXG37504	Sorghum	cytosol	86.08	85.0
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	84.81	83.75
Os03t0758800-01	Rice	nucleus, plasma membrane	84.81	83.23
KXG34269	Sorghum	cytosol	83.54	81.99
TraesCS2D01G190400.1	Wheat	cytosol	82.28	81.25
KXG36613	Sorghum	cytosol	81.65	80.62
Os07t0112800-01	Rice	nucleus	81.65	79.63
TraesCS5D01G116200.2	Wheat	cytosol	86.08	78.61
TraesCS2A01G262500.1	Wheat	cytosol	79.75	78.26
TraesCS2D01G261500.1	Wheat	nucleus	79.75	78.26
HORVU2Hr1G063210.3	Barley	cytosol	76.58	70.35
HORVU5Hr1G028360.3	Barley	mitochondrion	87.34	69.0
TraesCS2A01G182600.1	Wheat	mitochondrion	68.99	62.64
Bra007992.1-P	Field mustard	plastid	22.78	57.14
KRH64023	Soybean	plastid	15.19	16.78
GSMUA_Achr6P07860_001	Banana	nucleus	22.15	9.78

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra004379	EnsemblPlants:Bra004379.1	EnsemblPlants:Bra004379.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like
InterPro:IPR014722	UniProt:M4CJJ5	InterPro:NA-bd_OB-fold	PFAM:PF01287	PFAM:PF08207	PIRSF:PIRSF003025
ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Transl_elong_KOW-like	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000254183F	:	:	:	:	:

Description

AT1G69410 (E=2e-086) ATELF5A-3, ELF5A-3 | ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3); translation initiation factor

Coordinates

chrA07:+:18332604..18333605

Molecular Weight (calculated)

17279.4 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.408

Length

158 amino acids

Sequence
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGNIRKGG YIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE VLLTQLKSGF EEGKDIVVSV MSAMGEEQMC ALKEVSPK

Best Arabidopsis Sequence Match ( AT1G69410.1 )
(BLAST)

001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK

Arabidopsis Description

ELF5A-3Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C505]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.