Factsheet for Bra007992.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 3
golgi 1
plastid 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plasma membrane, plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY13072	Canola	cytosol	57.14	40.0
CDY03674	Canola	cytosol	60.32	34.55
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	60.32	23.75
Os03t0758800-01	Rice	nucleus, plasma membrane	60.32	23.6
Os12t0507200-01	Rice	plasma membrane, plastid	58.73	23.12
KXG34269	Sorghum	cytosol	58.73	22.98
Bra004379.1-P	Field mustard	cytosol	57.14	22.78
KRH74954	Soybean	cytosol	57.14	22.64
KXG37504	Sorghum	cytosol	57.14	22.5
Os07t0112800-01	Rice	nucleus	57.14	22.22
KRH70826	Soybean	cytosol	55.56	22.01
TraesCS5A01G104800.1	Wheat	cytosol	55.56	21.88
KXG36613	Sorghum	cytosol	53.97	21.25
TraesCS2D01G261500.1	Wheat	nucleus	53.97	21.12
TraesCS2A01G262500.1	Wheat	cytosol	53.97	21.12
Bra024702.1-P	Field mustard	cytosol	52.38	20.75
TraesCS2D01G190400.1	Wheat	cytosol	52.38	20.62
TraesCS5D01G116200.2	Wheat	cytosol	55.56	20.23
HORVU5Hr1G028360.3	Barley	mitochondrion	55.56	17.5
HORVU2Hr1G063210.3	Barley	cytosol	46.03	16.86
TraesCS2A01G182600.1	Wheat	mitochondrion	42.86	15.52

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	EnsemblPlantsGene:Bra007992	EnsemblPlants:Bra007992.1	EnsemblPlants:Bra007992.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006414
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	InterPro:IF5A-like	InterPro:IPR014722	UniProt:M4CUU7	PANTHER:PTHR11673
PANTHER:PTHR11673:SF16	InterPro:Rib_L2_dom2	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002546E11	:

Description

AT1G13950 (E=7e-010) EIF-5A, ELF5A-1, ATELF5A-1, EIF5A | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1); translation initiation factor

Coordinates

chrA02:-:12377406..12377759

Molecular Weight (calculated)

6875.6 Da

IEP (calculated)

10.246

GRAVY (calculated)

0.271

Length

63 amino acids

Sequence
(BLAST)

1: MTYSQEAGTI RKNGYIVIKG RPCKVVEAST SKLVNVTALP SISSLPTSLR ISFCLPTTVM FHM

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.