Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
golgi:
25769308
nucleus: 26228564 nucleus: 28628250 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
msms PMID:
28628250
doi
LIMOS, CNRS, Université Blaise Pascal, Aubière, 63173, France., UMR GDEC, INRA, Université Clermont Auvergne, 5 chemin de Beaulieu, Clermont-Ferrand, 63039, France., UMR GQE, INRA, Université Paris-Sud, CNRS, AgroParisTech, Université Paris-Saclay, Gif-sur-Yvette, 91190, France.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G279600.1 | Wheat | cytosol | 100.0 | 100.0 |
TraesCS2A01G262500.1 | Wheat | cytosol | 100.0 | 100.0 |
HORVU2Hr1G063210.3 | Barley | cytosol | 96.27 | 90.12 |
PGSC0003DMT400020252 | Potato | cytosol | 83.85 | 84.38 |
Os07t0112800-01 | Rice | nucleus | 84.47 | 83.95 |
VIT_11s0016g00020.t01 | Wine grape | cytosol | 83.23 | 83.75 |
VIT_04s0008g06540.t01 | Wine grape | cytosol | 83.23 | 83.75 |
Solyc12g010060.1.1 | Tomato | nucleus | 83.23 | 83.75 |
PGSC0003DMT400063132 | Potato | cytosol | 82.61 | 83.65 |
VIT_17s0000g06670.t01 | Wine grape | cytosol | 81.99 | 83.02 |
Solyc03g115650.2.1 | Tomato | cytosol, extracellular, nucleus | 83.23 | 82.72 |
Zm00001d007940_P002 | Maize | cytosol, extracellular | 81.99 | 82.5 |
PGSC0003DMT400028926 | Potato | cytosol | 81.99 | 82.5 |
AT1G26630.1 | Thale cress | cytosol | 81.37 | 82.39 |
Solyc07g005560.2.1 | Tomato | cytosol, nucleus, plastid | 81.37 | 81.88 |
TraesCS2D01G190400.1 | Wheat | cytosol | 81.37 | 81.88 |
PGSC0003DMT400068977 | Potato | cytosol | 80.75 | 81.76 |
PGSC0003DMT400007325 | Potato | cytosol, mitochondrion | 80.75 | 81.76 |
KRH70826 | Soybean | cytosol | 80.75 | 81.76 |
AT1G13950.1 | Thale cress | cytosol | 80.12 | 81.65 |
KRH56874 | Soybean | cytosol | 80.75 | 81.25 |
KRH72302 | Soybean | cytosol | 80.75 | 81.25 |
KRH54605 | Soybean | cytosol | 80.75 | 81.25 |
KRH63282 | Soybean | nucleus | 80.75 | 81.25 |
KRH03532 | Soybean | cytosol | 80.75 | 81.25 |
KRH74954 | Soybean | cytosol | 80.12 | 81.13 |
Bra024702.1-P | Field mustard | cytosol | 80.12 | 81.13 |
Solyc04g005510.2.1 | Tomato | cytosol, nucleus, plastid | 80.12 | 81.13 |
AT1G69410.1 | Thale cress | cytosol | 79.5 | 81.01 |
KXG34269 | Sorghum | cytosol | 80.75 | 80.75 |
Solyc05g006890.1.1 | Tomato | cytosol, nucleus | 79.5 | 80.5 |
Solyc01g011000.2.1 | Tomato | extracellular | 79.5 | 80.5 |
Bra004379.1-P | Field mustard | cytosol | 78.26 | 79.75 |
CDY40919 | Canola | cytosol | 77.64 | 79.11 |
CDX95937 | Canola | cytosol | 77.64 | 79.11 |
CDY71729 | Canola | cytosol | 77.64 | 79.11 |
KRH00098 | Soybean | cytosol | 37.27 | 75.95 |
TraesCS5D01G116200.2 | Wheat | cytosol | 80.75 | 75.14 |
KRH00097 | Soybean | cytosol | 29.81 | 64.86 |
CDY13072 | Canola | cytosol | 36.02 | 64.44 |
CDY03674 | Canola | cytosol | 41.61 | 60.91 |
Bra007992.1-P | Field mustard | plastid | 21.12 | 53.97 |
CDY36262 | Canola | cytosol | 29.19 | 28.31 |
CDX83676 | Canola | cytosol | 29.19 | 27.01 |
KRH03058 | Soybean | vacuole | 63.98 | 26.21 |
KRH64023 | Soybean | plastid | 14.29 | 16.08 |
Protein Annotations
MapMan:17.5.3.1 | Gene3D:2.30.30.30 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
GO:GO:0003746 | GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006452 | GO:GO:0008135 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0043022 |
GO:GO:0045901 | GO:GO:0045905 | InterPro:IF5A-like | InterPro:IPR014722 | InterPro:NA-bd_OB-fold | PFAM:PF01287 |
PIRSF:PIRSF003025 | ScanProsite:PS00302 | PANTHER:PTHR11673 | PANTHER:PTHR11673:SF22 | InterPro:Rib_L2_dom2 | SMART:SM01376 |
SUPFAM:SSF50104 | SUPFAM:SSF50249 | TIGRFAMs:TIGR00037 | EnsemblPlantsGene:TraesCS2D01G261500 | EnsemblPlants:TraesCS2D01G261500.1 | InterPro:Trans_elong_IF5A_hypusine_site |
InterPro:Transl_elong_IF5A_C | InterPro:Translation_prot_SH3-like_sf | TIGR:cd04468 | : | : | : |
Description
No Description!
Coordinates
chr2D:-:318077916..318079337
Molecular Weight (calculated)
17363.5 Da
IEP (calculated)
6.074
GRAVY (calculated)
-0.419
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDTDEHHFE SKADSGASKT YPQQAGAIRK GGHIVIKARP CKVVEVSTSK TGKHGHAKCH FVAIDIFNGK KLEDIVPSSH NCDVPHVDRQ DYQLIDITDD
101: GYVSLLTESG NTKDDLKLPT DDVLLGQIKT GFADGKDLIL SVMSAMGEEQ ICAVKEIGGG K
101: GYVSLLTESG NTKDDLKLPT DDVLLGQIKT GFADGKDLIL SVMSAMGEEQ ICAVKEIGGG K
001: MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK
Arabidopsis Description
ELF5A-2Eukaryotic translation initiation factor 5A-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VP3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.