CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83676	Canola	cytosol	48.8	46.55
Bra024702.1-P	Field mustard	cytosol	33.13	34.59
Os03t0758800-01	Rice	nucleus, plasma membrane	31.33	32.3
KXG37504	Sorghum	cytosol	30.72	31.88
CDX95937	Canola	cytosol	29.52	31.01
CDY40919	Canola	cytosol	29.52	31.01
CDY71729	Canola	cytosol	29.52	31.01
AT1G26630.1	Thale cress	cytosol	29.52	30.82
TraesCS5A01G104800.1	Wheat	cytosol	28.92	30.0
KXG34269	Sorghum	cytosol	28.92	29.81
Os07t0112800-01	Rice	nucleus	28.92	29.63
KXG36613	Sorghum	cytosol	28.31	29.38
Os12t0507200-01	Rice	plasma membrane, plastid	28.31	29.38
TraesCS2A01G262500.1	Wheat	cytosol	28.31	29.19
TraesCS2D01G261500.1	Wheat	nucleus	28.31	29.19
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	27.71	28.75
TraesCS5D01G116200.2	Wheat	cytosol	28.92	27.75
TraesCS2D01G190400.1	Wheat	cytosol	26.51	27.5
HORVU2Hr1G063210.3	Barley	cytosol	27.11	26.16
CDY03674	Canola	cytosol	16.87	25.45
CDY13072	Canola	cytosol	13.25	24.44
HORVU5Hr1G028360.3	Barley	mitochondrion	28.31	23.5
TraesCS2A01G182600.1	Wheat	mitochondrion	21.69	20.69
KRH64023	Soybean	plastid	8.43	9.79
GSMUA_Achr6P07860_001	Banana	nucleus	12.05	5.59

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.40.50.140	GO:A0A078HEP7	UniProt:A0A078HEP7	EnsemblPlants:CDY36262	ProteinID:CDY36262
ProteinID:CDY36262.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488
GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905
EnsemblPlantsGene:GSBRNA2T00060224001	InterPro:IF5A-like	InterPro:NA-bd_OB-fold	PFAM:PF01287	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22
SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EEB534

Description

BnaC07g21160DBnaC07g21160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HEP7]

Coordinates

chrLK032371:-:347837..349058

Molecular Weight (calculated)

18345.8 Da

IEP (calculated)

4.760

GRAVY (calculated)

-0.031

Length

166 amino acids

Sequence
(BLAST)

001: MTESSDAGAS MASKIGNLRL ASDIDINDHI DLSGKPCRVI DLYTKRGLCH LHTINILTGY FVRRIVPIST EFVIPDVSRD LYQLTGISYK DDSITLLHHS
101: GAYTRDDIFL PENENLRTMM VDGFNDDKRV IVGIVTSLGQ DAVYAVDVYQ AGSANDIDFV AKNVGF

Best Arabidopsis Sequence Match ( AT1G69410.1 )
(BLAST)

001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK

Arabidopsis Description

ELF5A-3Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C505]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.