CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40919	Canola	cytosol	100.0	100.0
Bra004379.1-P	Field mustard	cytosol	99.37	99.37
CDY71729	Canola	cytosol	99.37	99.37
AT1G69410.1	Thale cress	cytosol	97.47	97.47
TraesCS5A01G104800.1	Wheat	cytosol	86.71	85.62
Os12t0507200-01	Rice	plasma membrane, plastid	86.08	85.0
KXG37504	Sorghum	cytosol	86.08	85.0
Os03t0758800-01	Rice	nucleus, plasma membrane	85.44	83.85
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	84.81	83.75
KXG34269	Sorghum	cytosol	84.18	82.61
TraesCS2D01G190400.1	Wheat	cytosol	82.91	81.88
KXG36613	Sorghum	cytosol	81.65	80.62
Os07t0112800-01	Rice	nucleus	81.65	79.63
TraesCS5D01G116200.2	Wheat	cytosol	86.08	78.61
TraesCS2A01G262500.1	Wheat	cytosol	79.11	77.64
TraesCS2D01G261500.1	Wheat	nucleus	79.11	77.64
HORVU2Hr1G063210.3	Barley	cytosol	75.95	69.77
HORVU5Hr1G028360.3	Barley	mitochondrion	87.34	69.0
CDY13072	Canola	cytosol	38.61	67.78
TraesCS2A01G182600.1	Wheat	mitochondrion	69.62	63.22
CDY03674	Canola	cytosol	43.04	61.82
CDY36262	Canola	cytosol	31.01	29.52
CDX83676	Canola	cytosol	31.01	28.16
KRH64023	Soybean	plastid	15.19	16.78
GSMUA_Achr6P07860_001	Banana	nucleus	22.15	9.78

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:A0A078HU78	UniProt:A0A078HU78	EnsemblPlants:CDX95937
ProteinID:CDX95937	ProteinID:CDX95937.1	ProteinID:CDY40919.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	EnsemblPlantsGene:GSBRNA2T00101952001	InterPro:IF5A-like	InterPro:IPR014722	InterPro:NA-bd_OB-fold
PFAM:PF01287	PFAM:PF08207	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22
InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site
InterPro:Transl_elong_IF5A_C	InterPro:Transl_elong_KOW-like	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001D83EDE	:	:

Description

BnaA07g27940DEukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A078HU78]

Coordinates

chrLK031892:-:171770..173126

Molecular Weight (calculated)

17251.4 Da

IEP (calculated)

5.548

GRAVY (calculated)

-0.423

Length

158 amino acids

Sequence
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGNIRKGG YIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKSGF EEGKDIVVSV MSAMGEEQMC ALKEVSPK

Best Arabidopsis Sequence Match ( AT1G69410.1 )
(BLAST)

001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK

Arabidopsis Description

ELF5A-3Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C505]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.