CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36262	Canola	cytosol	46.55	48.8
Bra024702.1-P	Field mustard	cytosol	31.61	34.59
AT1G26630.1	Thale cress	cytosol	28.74	31.45
Os03t0758800-01	Rice	nucleus, plasma membrane	28.74	31.06
CDX95937	Canola	cytosol	28.16	31.01
CDY40919	Canola	cytosol	28.16	31.01
CDY71729	Canola	cytosol	28.16	31.01
Os07t0112800-01	Rice	nucleus	28.74	30.86
TraesCS5A01G104800.1	Wheat	cytosol	28.16	30.62
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	28.16	30.62
KXG37504	Sorghum	cytosol	28.16	30.62
KXG36613	Sorghum	cytosol	28.16	30.62
Os12t0507200-01	Rice	plasma membrane, plastid	27.59	30.0
KXG34269	Sorghum	cytosol	27.59	29.81
TraesCS2A01G262500.1	Wheat	cytosol	27.01	29.19
TraesCS2D01G261500.1	Wheat	nucleus	27.01	29.19
TraesCS5D01G116200.2	Wheat	cytosol	28.16	28.32
CDY13072	Canola	cytosol	14.37	27.78
CDY03674	Canola	cytosol	17.24	27.27
TraesCS2D01G190400.1	Wheat	cytosol	24.71	26.88
HORVU2Hr1G063210.3	Barley	cytosol	25.86	26.16
HORVU5Hr1G028360.3	Barley	mitochondrion	27.59	24.0
TraesCS2A01G182600.1	Wheat	mitochondrion	20.11	20.11
KRH64023	Soybean	plastid	8.62	10.49
GSMUA_Achr6P07860_001	Banana	nucleus	10.92	5.31

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.40.50.140	GO:A0A078D2R5	EnsemblPlants:CDX83676	ProteinID:CDX83676	ProteinID:CDX83676.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	EnsemblPlantsGene:GSBRNA2T00139380001
InterPro:IF5A-like	InterPro:NA-bd_OB-fold	PFAM:PF01287	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	SUPFAM:SSF50104
SUPFAM:SSF50249	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EE6574	:	:

Description

BnaC07g24160D

Coordinates

chrLK031833:-:1557697..1558746

Molecular Weight (calculated)

19607.4 Da

IEP (calculated)

9.227

GRAVY (calculated)

-0.203

Length

174 amino acids

Sequence
(BLAST)

001: MTTGSSHDGA SRRASKIGNR KRTLRLASEI VLNDHIDIKG KPCRVLEAYT KRSLRYFYTI DILTGYIVWS IVPTSTKFVI PDVSTDIYQL IGISYKNHSV
101: TLLHLSSDYT RNDIFLPEDR QLRNLMVNGF NDDKIVYVAV VSSLGKDAVY RVQVDDKTDS AISDVVANNV GFKE

Best Arabidopsis Sequence Match ( AT1G69410.1 )
(BLAST)

001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK

Arabidopsis Description

ELF5A-3Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C505]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.