Factsheet for Zm00001d007940_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34269	Sorghum	cytosol	90.62	90.06
Os07t0112800-01	Rice	nucleus	88.12	87.04
Zm00001d006760_P001	Maize	cytosol	82.5	82.5
Zm00001d022042_P006	Maize	cytosol	82.5	82.5
TraesCS2A01G262500.1	Wheat	cytosol	82.5	81.99
TraesCS2B01G279600.1	Wheat	cytosol	82.5	81.99
TraesCS2D01G261500.1	Wheat	nucleus	82.5	81.99
HORVU2Hr1G063210.3	Barley	cytosol	79.38	73.84
Zm00001d013648_P001	Maize	plastid	50.62	35.53

Protein Annotations

EntrezGene:100192991	MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	UniProt:B4FDE1	EMBL:BT035129
EMBL:EU960356	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003746
GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	InterPro:NA-bd_OB-fold	ProteinID:ONM27981.1
ProteinID:ONM27982.1	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22
InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site
InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00017B6763	EnsemblPlantsGene:Zm00001d007940	EnsemblPlants:Zm00001d007940_P002	EnsemblPlants:Zm00001d007940_T002

Description

Eukaryotic translation initiation factor 5A-1

Coordinates

chr2:-:243480096..243481628

Molecular Weight (calculated)

17443.5 Da

IEP (calculated)

5.056

GRAVY (calculated)

-0.557

Length

160 amino acids

Sequence
(BLAST)

001: MSDEEHQFES KADAGASKTY PQQAGTIRKN GYIVIKGRPC KVVEVSTSKT GKHGHAKCHF VGIDVFTGKK LEDIVPSSHN CDVPHVDRTE YQLIDITEDG
101: FVSLLTDSGN TKDDLRLPTD EALEGQIKSG YDDGKDLLLT VMSSMGEEQI CAVKEIGGKN

Best Arabidopsis Sequence Match ( AT1G26630.1 )
(BLAST)

001: MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK

Arabidopsis Description

ELF5A-2Eukaryotic translation initiation factor 5A-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.