Factsheet for Zm00001d013648_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P23990_001	Banana	cytosol	21.49	60.49
Zm00001d006760_P001	Maize	cytosol	41.23	58.75
Zm00001d022042_P006	Maize	cytosol	41.23	58.75
PGSC0003DMT400028926	Potato	cytosol	38.16	54.38
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	38.16	54.38
PGSC0003DMT400020252	Potato	cytosol	37.72	53.75
Solyc12g010060.1.1	Tomato	nucleus	37.72	53.75
VIT_11s0016g00020.t01	Wine grape	cytosol	37.72	53.75
Zm00001d007940_P002	Maize	cytosol, extracellular	35.53	50.62
TraesCS6B01G411200.1	Wheat	mitochondrion	28.51	38.01
KRH03058	Soybean	vacuole	38.16	22.14

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	UniProt:A0A1Q0ZHZ7	ProteinID:AQK64076.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412
GO:GO:0006413	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905
InterPro:IF5A-like	InterPro:IPR014722	InterPro:NA-bd_OB-fold	PFAM:PF01287	ScanProsite:PS00302	PANTHER:PTHR11673
PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037
InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00097CD78C	EnsemblPlantsGene:Zm00001d013648	EnsemblPlants:Zm00001d013648_P001
EnsemblPlants:Zm00001d013648_T001	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 5A-1

Coordinates

chr5:-:16157006..16159967

Molecular Weight (calculated)

25490.2 Da

IEP (calculated)

8.412

GRAVY (calculated)

-0.100

Length

228 amino acids

Sequence
(BLAST)

001: MSPAVIPLPP HHLRPPLRSP SVEGSLPPLP SPPQSMDAPA PRRAHTCLVL LLIPALLLLP SMARSPIAHL LLFYCVCLLN MVDKKLMIQV VEVSTSKTGK
101: HGHAKCHFVA IDIFNGKKLE DIVPSSHNCD IPHVNRTEYQ LIDISEDGFV SLLTSDGNTK DDLRLPTDET LVAQVWGTRN WDRIRSCLQD SKVCRSLQNK
201: NEKIAHLSQV NLKCYHVTGY YFSNIKHI

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.