Factsheet for TraesCS6B01G411200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G108600.1	Wheat	plastid	61.4	65.62
VIT_11s0016g00020.t01	Wine grape	cytosol	60.23	64.38
PGSC0003DMT400020252	Potato	cytosol	59.65	63.75
Solyc12g010060.1.1	Tomato	nucleus	59.06	63.12
PGSC0003DMT400028926	Potato	cytosol	58.48	62.5
TraesCS2B01G279600.1	Wheat	cytosol	58.48	62.11
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	57.89	61.88
GSMUA_Achr6P23990_001	Banana	cytosol	26.32	55.56
TraesCS2B01G209100.1	Wheat	cytosol, mitochondrion	56.73	48.5
Zm00001d013648_P001	Maize	plastid	38.01	28.51
KRH03058	Soybean	vacuole	56.14	24.43

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	InterPro:NA-bd_OB-fold	PFAM:PF01287
PIRSF:PIRSF003025	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGRFAMs:TIGR00037	EnsemblPlantsGene:TraesCS6B01G411200	EnsemblPlants:TraesCS6B01G411200.1	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf
TIGR:cd04468	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6B:-:685160273..685162622

Molecular Weight (calculated)

18885.4 Da

IEP (calculated)

7.303

GRAVY (calculated)

-0.430

Length

171 amino acids

Sequence
(BLAST)

001: MERSFWVLIR GRGGCRTRNI SSSRGPTRVR RRPTRSRPAP SGGHGYIVIE NRPCKVVKVS TSETGDYGSC HFVAIDIFTS EKFEYSVSSS DNCYVPHVNR
101: TDYQLIDITD DGYVSLLTEN GGTKDDLKLP TDDALLCQIK DGFAEGKDLV VSVMSAMGEE QICALKDIGP K

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.