Factsheet for Solyc12g010060.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 20496099
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020252	Potato	cytosol	97.5	97.5
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	92.5	92.5
Os12t0507200-01	Rice	plasma membrane, plastid	91.88	91.88
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.25	91.25
GSMUA_Achr10P...	Banana	cytosol	90.62	91.19
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	91.88	90.74
Os07t0112800-01	Rice	nucleus	91.25	90.12
VIT_11s0016g00020.t01	Wine grape	cytosol	90.0	90.0
Solyc01g011000.2.1	Tomato	extracellular	89.38	89.94
KRH72302	Soybean	cytosol	89.38	89.38
KXG37504	Sorghum	cytosol	89.38	89.38
GSMUA_Achr6P16740_001	Banana	cytosol	88.75	89.31
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	88.75	89.31
TraesCS5A01G104800.1	Wheat	cytosol	88.75	88.75
Os03t0758800-01	Rice	nucleus, plasma membrane	88.75	88.2
KXG36613	Sorghum	cytosol	87.5	87.5
Solyc05g006890.1.1	Tomato	cytosol, nucleus	86.88	87.42
KXG34269	Sorghum	cytosol	85.0	84.47
TraesCS2A01G262500.1	Wheat	cytosol	83.75	83.23
TraesCS2D01G261500.1	Wheat	nucleus	83.75	83.23
TraesCS2D01G190400.1	Wheat	cytosol	83.12	83.12
TraesCS5D01G116200.2	Wheat	cytosol	88.75	82.08
HORVU2Hr1G063210.3	Barley	cytosol	80.62	75.0
GSMUA_Achr6P23990_001	Banana	cytosol	36.88	72.84
GSMUA_Achr3P02260_001	Banana	cytosol	91.25	72.64
HORVU5Hr1G028360.3	Barley	mitochondrion	88.75	71.0
GSMUA_Achr11P...	Banana	plasma membrane	92.5	67.27
TraesCS2A01G182600.1	Wheat	mitochondrion	68.12	62.64
TraesCS6B01G411200.1	Wheat	mitochondrion	63.12	59.06
Zm00001d013648_P001	Maize	plastid	53.75	37.72
GSMUA_Achr3P18790_001	Banana	cytosol	90.0	27.32

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EMBL:AF296086	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like
InterPro:IPR014722	InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673
PANTHER:PTHR11673:SF22	UniProt:Q9AXQ3	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249
EnsemblPlantsGene:Solyc12g010060.1	EnsemblPlants:Solyc12g010060.1.1	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000012D38A	SEG:seg	:	:	:	:

Description

Eukaryotic translation initiation factor 5A-4 [Source:UniProtKB/Swiss-Prot;Acc:Q9AXQ3]

Coordinates

chr12:-:3203778..3206878

Molecular Weight (calculated)

17517.7 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.491

Length

160 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KADAGASKTY PQQAGTIRKN GYIVIKGRPC KVVEVSTSKT GKHGHAKCHF VAIDIFNAKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTENGN TKDDLRLPTD DTLLNQVKGG FEEGKDLVLS VMSAMGEEQI CAVKDIGTKT

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.