Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16740_001 | Banana | cytosol | 75.31 | 38.36 |
| VIT_11s0016g00020.t01 | Wine grape | cytosol | 74.07 | 37.5 |
| GSMUA_Achr10P... | Banana | cytosol | 72.84 | 37.11 |
| PGSC0003DMT400028926 | Potato | cytosol | 72.84 | 36.88 |
| Solyc07g005560.2.1 | Tomato | cytosol, nucleus, plastid | 72.84 | 36.88 |
| Solyc12g010060.1.1 | Tomato | nucleus | 72.84 | 36.88 |
| PGSC0003DMT400020252 | Potato | cytosol | 71.6 | 36.25 |
| GSMUA_Achr3P02260_001 | Banana | cytosol | 76.54 | 30.85 |
| GSMUA_Achr11P... | Banana | plasma membrane | 79.01 | 29.09 |
| TraesCS6B01G411200.1 | Wheat | mitochondrion | 55.56 | 26.32 |
| Zm00001d013648_P001 | Maize | plastid | 60.49 | 21.49 |
| KRH03058 | Soybean | vacuole | 62.96 | 12.98 |
| GSMUA_Achr3P18790_001 | Banana | cytosol | 75.31 | 11.57 |
| GSMUA_Achr6P07860_001 | Banana | nucleus | 16.05 | 3.63 |
| GSMUA_Achr6P11110_001 | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:17.5.3.1 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003746 |
| GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006452 | GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0043022 | GO:GO:0045901 |
| GO:GO:0045905 | EnsemblPlantsGene:GSMUA_Achr6G23990_001 | EnsemblPlants:GSMUA_Achr6P23990_001 | EnsemblPlants:GSMUA_Achr6T23990_001 | InterPro:IF5A-like | UniProt:M0T9P7 |
| InterPro:NA-bd_OB-fold | PFAM:PF01287 | PANTHER:PTHR11673 | PANTHER:PTHR11673:SF22 | SMART:SM01376 | SUPFAM:SSF50249 |
| InterPro:Transl_elong_IF5A_C | UniParc:UPI000296B41F | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G23990_001]
Coordinates
chr6:+:24342892..24346952
Molecular Weight (calculated)
9216.9 Da
IEP (calculated)
4.756
GRAVY (calculated)
-0.416
Length
81 amino acids
Sequence
(BLAST)
(BLAST)
1: MRIEEHHFGA AVQGCRDIVL SSHNCDVPHV TRTDYQLIDI SEDGFVNLLT ENVNTKDDLR LPTDETLLAQ IKDGLQKGRI W
001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK
Arabidopsis Description
ELF5A-3Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C505]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.