Factsheet for GSMUA_Achr3P18790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	28.46	94.34
GSMUA_Achr6P16740_001	Banana	cytosol	28.27	93.71
PGSC0003DMT400028926	Potato	cytosol	27.51	90.62
Solyc12g010060.1.1	Tomato	nucleus	27.32	90.0
VIT_11s0016g00020.t01	Wine grape	cytosol	27.32	90.0
PGSC0003DMT400020252	Potato	cytosol	26.95	88.75
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	26.95	88.75
GSMUA_Achr6P11110_001	Banana	cytosol	3.04	84.21
GSMUA_Achr6P23990_001	Banana	cytosol	11.57	75.31
GSMUA_Achr3P02260_001	Banana	cytosol	28.08	73.63
GSMUA_Achr11P...	Banana	plasma membrane	29.79	71.36
GSMUA_Achr6P07860_001	Banana	nucleus	7.4	10.89

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	InterPro:DUF863_pln	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	EnsemblPlantsGene:GSMUA_Achr3G18790_001	EnsemblPlants:GSMUA_Achr3P18790_001	EnsemblPlants:GSMUA_Achr3T18790_001
InterPro:IF5A-like	InterPro:IPR014722	UniProt:M0SFU5	InterPro:NA-bd_OB-fold	PFAM:PF01287	PFAM:PF05904
ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00029665BC
SEG:seg	:	:	:	:	:

Description

Eukaryotic translation initiation factor 5A [Source:GMGC_GENE;Acc:GSMUA_Achr3G18790_001]

Coordinates

chr3:+:20171172..20180659

Molecular Weight (calculated)

59529.8 Da

IEP (calculated)

7.151

GRAVY (calculated)

-0.579

Length

527 amino acids

Sequence
(BLAST)

001: MGTKVQYKCH VSGYHPIRDL DEHTKFSWSP FSEDKSFSWQ LCNDFKPRTI SSWSTYDKET LKQTMLEHEA TFQTQVYELH RLYRIQRELM YEIKRKQLNR
101: FSGPTQTSKS SMFLSQIPHE FGVHLPHPPL VNTHRITSNI ADGDDKRASC NFLKEGVTQC SLISTANGGR ASNDRPFDTK LKMFPKRMLD LHLPAEVYIK
201: NEGTEKQDRD NIAESCTMAV ENLNINHAVE IENDVMSTLE VPLFGIGTLK SNLHPKNDLS IHSLVDLNEP IKDSCEKGAI SSSSHESCGM NVHYKQLHHP
301: WAPMNFRSRF PDRNFSMDKH RDVGTFNYFD TDKPLPACPT PAPSPRLPLG ILFPLPLPRR RQIPLPGIMS DEEHHFESKA DAGASKTYPQ QAGTIRKNGY
401: IVIKGRPCKV VEVSTSKTGK HGHAKCHFVG IDIFNAKKLE DIVPSSHNCD VPHVTRTDYQ LIDISEDGFV SLLTENGNTK DDLRLPTDES LLAPIKDGFA
501: EGKDLVVSVM CSMGEEQICA LKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.