Factsheet for GSMUA_Achr11P09550_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
mitochondrion 2
cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	69.55	96.23
GSMUA_Achr6P16740_001	Banana	cytosol	68.64	94.97
GSMUA_Achr6P11110_001	Banana	cytosol	8.18	94.74
Solyc12g010060.1.1	Tomato	nucleus	67.27	92.5
VIT_11s0016g00020.t01	Wine grape	cytosol	67.27	92.5
PGSC0003DMT400028926	Potato	cytosol	66.82	91.88
PGSC0003DMT400020252	Potato	cytosol	65.91	90.62
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	65.91	90.62
GSMUA_Achr3P02260_001	Banana	cytosol	72.73	79.6
GSMUA_Achr6P23990_001	Banana	cytosol	29.09	79.01
GSMUA_Achr3P18790_001	Banana	cytosol	71.36	29.79
GSMUA_Achr6P07860_001	Banana	nucleus	15.91	9.78

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	EnsemblPlantsGene:GSMUA_Achr11G09550_001	EnsemblPlants:GSMUA_Achr11P09550_001	EnsemblPlants:GSMUA_Achr11T09550_001	InterPro:IF5A-like
InterPro:IPR014722	UniProt:M0RQT5	InterPro:NA-bd_OB-fold	PFAM:PF01287	ScanProsite:PS00302	PANTHER:PTHR11673
PANTHER:PTHR11673:SF16	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037
InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002963CD8	SEG:seg	:

Description

Eukaryotic translation initiation factor 5A [Source:GMGC_GENE;Acc:GSMUA_Achr11G09550_001]

Coordinates

chr11:-:7422831..7427465

Molecular Weight (calculated)

24394.2 Da

IEP (calculated)

7.283

GRAVY (calculated)

-0.352

Length

220 amino acids

Sequence
(BLAST)

001: MTVIIDQKWT VHVYSPIENP TPRHSRYLWV QNPLPRSAPR LLLRVPASFL ASAPLPPRSA IMSDEEHHFE SKADAGASKT YPQQAGTIRK NGYIVIKNRP
101: CKVVEVSTSK TGKHGHAKCH FVAIDIFNAK KLEDIVPSSH NCDVPHVTRT DYQLIDISED GFVSLLTENG NTKDDLRLPT DETLLAQIKD GFAEGKDLVV
201: TVMSAMGEEQ ICALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.