Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 1
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P11110_001 | Banana | cytosol | 8.96 | 94.74 |
| VIT_11s0016g00020.t01 | Wine grape | cytosol | 74.63 | 93.75 |
| GSMUA_Achr10P... | Banana | cytosol | 73.63 | 93.08 |
| GSMUA_Achr6P16740_001 | Banana | cytosol | 72.64 | 91.82 |
| Solyc12g010060.1.1 | Tomato | nucleus | 72.64 | 91.25 |
| PGSC0003DMT400028926 | Potato | cytosol | 72.14 | 90.62 |
| PGSC0003DMT400020252 | Potato | cytosol | 71.14 | 89.38 |
| Solyc07g005560.2.1 | Tomato | cytosol, nucleus, plastid | 71.14 | 89.38 |
| GSMUA_Achr6P23990_001 | Banana | cytosol | 30.85 | 76.54 |
| GSMUA_Achr11P... | Banana | plasma membrane | 79.6 | 72.73 |
| GSMUA_Achr3P18790_001 | Banana | cytosol | 73.63 | 28.08 |
| GSMUA_Achr6P07860_001 | Banana | nucleus | 18.41 | 10.34 |
Protein Annotations
| MapMan:17.5.3.1 | Gene3D:2.30.30.30 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003746 | GO:GO:0005488 | GO:GO:0006412 | GO:GO:0006452 | GO:GO:0008135 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0043022 |
| GO:GO:0045901 | GO:GO:0045905 | EnsemblPlantsGene:GSMUA_Achr3G02260_001 | EnsemblPlants:GSMUA_Achr3P02260_001 | EnsemblPlants:GSMUA_Achr3T02260_001 | InterPro:IF5A-like |
| InterPro:IPR014722 | UniProt:M0SB44 | InterPro:NA-bd_OB-fold | PFAM:PF01287 | PIRSF:PIRSF003025 | ScanProsite:PS00302 |
| PANTHER:PTHR11673 | PANTHER:PTHR11673:SF22 | InterPro:Rib_L2_dom2 | SMART:SM01376 | SUPFAM:SSF50104 | SUPFAM:SSF50249 |
| TIGRFAMs:TIGR00037 | InterPro:Trans_elong_IF5A_hypusine_site | InterPro:Transl_elong_IF5A_C | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI000295604A | : |
Description
Eukaryotic translation initiation factor 5A-4 [Source:GMGC_GENE;Acc:GSMUA_Achr3G02260_001]
Coordinates
chr3:-:1482799..1486793
Molecular Weight (calculated)
21735.0 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.281
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MTPTPTILLD IYGKATLIQC CGGFRSLGSS HLAPARPPPS VTMSDEEHHF ESKADAGASK TYPQQAGAIR KNGYIVIKGR PCKVVEVSTS KTGKHGHAKC
101: HFVAIDVFNA KKLEDIVPSS HNCDVPHVNR TDYQLIDISE DGFVSLLMEN GNTKDDLRLP TDETLLAQIK DGFADGKDLV VTVMSAMGEE QICALKDIGP
201: K
101: HFVAIDVFNA KKLEDIVPSS HNCDVPHVNR TDYQLIDISE DGFVSLLMEN GNTKDDLRLP TDETLLAQIK DGFADGKDLV VTVMSAMGEE QICALKDIGP
201: K
001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK
Arabidopsis Description
ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.