CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00020.t01	Wine grape	cytosol	91.88	91.88
TraesCS5A01G104800.1	Wheat	cytosol	91.88	91.88
PGSC0003DMT400028926	Potato	cytosol	91.25	91.25
KXG37504	Sorghum	cytosol	91.25	91.25
Os12t0507200-01	Rice	plasma membrane, plastid	90.62	90.62
KRH03532	Soybean	cytosol	90.62	90.62
KRH54605	Soybean	cytosol	90.62	90.62
KRH56874	Soybean	cytosol	90.62	90.62
KRH63282	Soybean	nucleus	90.62	90.62
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	90.62	90.62
KRH70826	Soybean	cytosol	90.0	90.57
Os03t0758800-01	Rice	nucleus, plasma membrane	90.62	90.06
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	90.0	90.0
PGSC0003DMT400020252	Potato	cytosol	90.0	90.0
KRH74954	Soybean	cytosol	89.38	89.94
Solyc12g010060.1.1	Tomato	nucleus	89.38	89.38
KXG36613	Sorghum	cytosol	87.5	87.5
Os07t0112800-01	Rice	nucleus	85.62	84.57
KXG34269	Sorghum	cytosol	85.0	84.47
TraesCS5D01G116200.2	Wheat	cytosol	91.25	84.39
TraesCS2D01G190400.1	Wheat	cytosol	83.12	83.12
KRH00098	Soybean	cytosol	40.62	82.28
KRH00097	Soybean	cytosol	37.5	81.08
TraesCS2A01G262500.1	Wheat	cytosol	81.25	80.75
TraesCS2D01G261500.1	Wheat	nucleus	81.25	80.75
HORVU5Hr1G028360.3	Barley	mitochondrion	91.25	73.0
HORVU2Hr1G063210.3	Barley	cytosol	78.12	72.67
TraesCS2A01G182600.1	Wheat	mitochondrion	68.75	63.22
KRH03058	Soybean	vacuole	75.0	30.53
KRH64023	Soybean	plastid	16.88	18.88

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EMBL:ACUP02001199	EnsemblPlantsGene:GLYMA_02G203700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	UniProt:I1JGP5	InterPro:IF5A-like
InterPro:IPR014722	ProteinID:KRH72300.1	ProteinID:KRH72301.1	EnsemblPlants:KRH72302	ProteinID:KRH72302	ProteinID:KRH72302.1
InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22
InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site
InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001BA88F7	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:38909840..38915026

Molecular Weight (calculated)

17473.5 Da

IEP (calculated)

5.536

GRAVY (calculated)

-0.492

Length

160 amino acids

Sequence
(BLAST)

001: MSDEEHHFDS QADAGASKTY PQQAGTIRKN GYIVIKSRPC KVVEVSTSKT GKHGHAKCHF VAIDIFNGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTDNGN TKDDLKLPTD EALLAQIKDG FSEGKDLVVS VMSAMGEEQI CSLKDIGPKN

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.