CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70826	Soybean	cytosol	98.74	98.74
Os03t0758800-01	Rice	nucleus, plasma membrane	93.08	91.93
Os12t0507200-01	Rice	plasma membrane, plastid	92.45	91.88
KXG37504	Sorghum	cytosol	92.45	91.88
KRH03532	Soybean	cytosol	92.45	91.88
KRH54605	Soybean	cytosol	92.45	91.88
KRH56874	Soybean	cytosol	92.45	91.88
KRH63282	Soybean	nucleus	92.45	91.88
TraesCS5A01G104800.1	Wheat	cytosol	91.19	90.62
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.19	90.62
KRH72302	Soybean	cytosol	89.94	89.38
KRH00098	Soybean	cytosol	42.77	86.08
Os07t0112800-01	Rice	nucleus	87.42	85.8
KXG36613	Sorghum	cytosol	86.16	85.62
KXG34269	Sorghum	cytosol	86.16	85.09
TraesCS5D01G116200.2	Wheat	cytosol	90.57	83.24
TraesCS2D01G190400.1	Wheat	cytosol	81.76	81.25
TraesCS2A01G262500.1	Wheat	cytosol	81.13	80.12
TraesCS2D01G261500.1	Wheat	nucleus	81.13	80.12
KRH00097	Soybean	cytosol	35.85	77.03
HORVU2Hr1G063210.3	Barley	cytosol	79.25	73.26
HORVU5Hr1G028360.3	Barley	mitochondrion	90.57	72.0
CDY13072	Canola	cytosol	38.99	68.89
CDY03674	Canola	cytosol	43.4	62.73
TraesCS2A01G182600.1	Wheat	mitochondrion	66.67	60.92
Bra007992.1-P	Field mustard	plastid	22.64	57.14
KRH03058	Soybean	vacuole	69.81	28.24
KRH64023	Soybean	plastid	16.35	18.18

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EMBL:ACUP02000099	EMBL:BT089155	UniProt:C6SVG2
EnsemblPlantsGene:GLYMA_01G054000	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488
GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905
InterPro:IF5A-like	InterPro:IPR014722	EnsemblPlants:KRH74954	ProteinID:KRH74954	ProteinID:KRH74954.1	InterPro:NA-bd_OB-fold
PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF16	InterPro:Rib_L2_dom2
SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0001B15669	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6955912..6957783

Molecular Weight (calculated)

17398.6 Da

IEP (calculated)

5.869

GRAVY (calculated)

-0.430

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KADAGASKTF PQQAGTIRKN GYIVIKNRPC KVVEVSTSKT GKHGHAKCHF VGIDIFTGKK LEDIVPSSHN CDVPHVNRID YQLIDISEDG
101: FVSLLTETGG TKDDLRLPTD ENLLTQIKDG FAEGKDLVVS VMSSMGEEQI CALKDIGPK

Best Arabidopsis Sequence Match ( AT1G26630.1 )
(BLAST)

001: MSDDEHHFEA SESGASKTYP QSAGNIRKGG HIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTAKKL EDIVPSSHNC DVPHVNRVDY QLIDITEDGF
101: VSLLTDSGGT KDDLKLPTDD GLTAQMRLGF DEGKDIVVSV MSSMGEEQIC AVKEVGGGK

Arabidopsis Description

ELF5A-2Eukaryotic translation initiation factor 5A-2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VP3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.