Factsheet for Solyc03g115650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 20496099
nucleus: 25464976

msms PMID: 20496099 doi

D Dahal, A Pich, HP Braun, K Wydra

Institute for Plant Diseases and Plant Protection, Faculty of Natural Sciences, Leibniz Universität Hannover, Herrenhäuser Str.2, 30419 Hannover, Germany. dahal@ipp.uni-hannover.de

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063132	Potato	cytosol	97.53	99.37
Solyc12g010060.1.1	Tomato	nucleus	90.74	91.88
TraesCS5A01G104800.1	Wheat	cytosol	90.12	91.25
Os12t0507200-01	Rice	plasma membrane, plastid	90.12	91.25
VIT_17s0000g06670.t01	Wine grape	cytosol	89.51	91.19
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	89.51	91.19
Solyc01g011000.2.1	Tomato	extracellular	89.51	91.19
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	88.89	90.0
KRH63282	Soybean	nucleus	88.89	90.0
KRH56874	Soybean	cytosol	88.89	90.0
KRH54605	Soybean	cytosol	88.89	90.0
KRH03532	Soybean	cytosol	88.89	90.0
Os03t0758800-01	Rice	nucleus, plasma membrane	88.89	89.44
Solyc05g006890.1.1	Tomato	cytosol, nucleus	87.65	89.31
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	87.65	88.75
KXG37504	Sorghum	cytosol	87.65	88.75
AT1G13950.1	Thale cress	cytosol	85.8	87.97
Os07t0112800-01	Rice	nucleus	86.42	86.42
KXG36613	Sorghum	cytosol	84.57	85.62
AT1G69410.1	Thale cress	cytosol	83.33	85.44
TraesCS2D01G190400.1	Wheat	cytosol	83.33	84.38
KXG34269	Sorghum	cytosol	83.33	83.85
KRH00098	Soybean	cytosol	40.74	83.54
TraesCS5D01G116200.2	Wheat	cytosol	88.89	83.24
TraesCS2A01G262500.1	Wheat	cytosol	82.72	83.23
TraesCS2D01G261500.1	Wheat	nucleus	82.72	83.23
AT1G26630.1	Thale cress	cytosol	79.01	80.5
HORVU2Hr1G063210.3	Barley	cytosol	80.25	75.58
KRH00097	Soybean	cytosol	33.95	74.32
HORVU5Hr1G028360.3	Barley	mitochondrion	89.51	72.5
TraesCS2A01G182600.1	Wheat	mitochondrion	67.9	63.22
GSMUA_Achr6P07860_001	Banana	nucleus	20.99	9.5

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	UniProt:K4BL67	InterPro:NA-bd_OB-fold
PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2
SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc03g115650.2	EnsemblPlants:Solyc03g115650.2.1	TIGRFAMs:TIGR00037
InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002768B38	SEG:seg	:

Description

Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:K4BL67]

Coordinates

chr3:+:65287614..65290545

Molecular Weight (calculated)

17644.9 Da

IEP (calculated)

6.076

GRAVY (calculated)

-0.459

Length

162 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KADAGASKTY PQQAGTIRKG GHIVIKNRPC KVVEVSTSKT GKHGHAKCHF VAIDIFTGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTENGN TKDDLRLPTD DTLLAQVTQV KDGFAEGKDL VLSVMSAMGE EQICGIKDIG PK

Best Arabidopsis Sequence Match ( AT1G69410.1 )
(BLAST)

001: MSDDEHHFES SDAGASKTYP QQAGNIRKGG HIVIKGRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRVDY QLIDISEDGF
101: VSLLTDNGST KDDLKLPTDE ALLTQLKNGF EEGKDIVVSV MSAMGEEQMC ALKEVGPK

Arabidopsis Description

ELF5A-3Eukaryotic translation initiation factor 5A-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C505]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.