Factsheet for VIT_17s0000g06670.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g00020.t01	Wine grape	cytosol	95.6	95.0
Os12t0507200-01	Rice	plasma membrane, plastid	94.34	93.75
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	93.71	93.12
VIT_04s0008g06540.t01	Wine grape	cytosol	93.08	92.5
KRH63282	Soybean	nucleus	93.08	92.5
KRH56874	Soybean	cytosol	93.08	92.5
KRH54605	Soybean	cytosol	93.08	92.5
KRH03532	Soybean	cytosol	93.08	92.5
Solyc04g005510.2.1	Tomato	cytosol, nucleus, plastid	92.45	92.45
Solyc01g011000.2.1	Tomato	extracellular	92.45	92.45
PGSC0003DMT400068977	Potato	cytosol	92.45	92.45
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	92.45	92.45
KXG37504	Sorghum	cytosol	92.45	91.88
Os03t0758800-01	Rice	nucleus, plasma membrane	92.45	91.3
PGSC0003DMT400063132	Potato	cytosol	91.19	91.19
TraesCS5A01G104800.1	Wheat	cytosol	91.19	90.62
Solyc05g006890.1.1	Tomato	cytosol, nucleus	90.57	90.57
AT1G13950.1	Thale cress	cytosol	89.31	89.87
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	91.19	89.51
Os07t0112800-01	Rice	nucleus	89.94	88.27
KXG36613	Sorghum	cytosol	88.05	87.5
AT1G69410.1	Thale cress	cytosol	85.53	86.08
KRH00098	Soybean	cytosol	42.14	84.81
KXG34269	Sorghum	cytosol	85.53	84.47
TraesCS5D01G116200.2	Wheat	cytosol	90.57	83.24
TraesCS2D01G190400.1	Wheat	cytosol	83.65	83.12
TraesCS2A01G262500.1	Wheat	cytosol	83.02	81.99
TraesCS2D01G261500.1	Wheat	nucleus	83.02	81.99
KRH00097	Soybean	cytosol	37.11	79.73
AT1G26630.1	Thale cress	cytosol	78.62	78.62
HORVU2Hr1G063210.3	Barley	cytosol	79.87	73.84
HORVU5Hr1G028360.3	Barley	mitochondrion	90.57	72.0
TraesCS2A01G182600.1	Wheat	mitochondrion	68.55	62.64
GSMUA_Achr6P07860_001	Banana	nucleus	22.01	9.78

Protein Annotations

EntrezGene:100852874	wikigene:100852874	MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	UniProt:A5B605
EMBL:AM447810	ProteinID:CAN69723	ProteinID:CAN69723.1	ProteinID:CBI15181	ProteinID:CBI15181.3	EMBL:FN594950
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003746	GO:GO:0005488	GO:GO:0006412
GO:GO:0006452	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like
InterPro:IPR014722	EntrezGene:LOC100852874	wikigene:LOC100852874	InterPro:NA-bd_OB-fold	PFAM:PF01287	PIRSF:PIRSF003025
ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104
SUPFAM:SSF50249	TIGR:TC53332	TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI00015202AE	ArrayExpress:VIT_17s0000g06670	EnsemblPlantsGene:VIT_17s0000g06670	EnsemblPlants:VIT_17s0000g06670.t01	RefSeq:XP_003634303	RefSeq:XP_003634303.1

Description

Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A5B605]

Coordinates

chr17:-:7228008..7230687

Molecular Weight (calculated)

17414.5 Da

IEP (calculated)

5.867

GRAVY (calculated)

-0.523

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHHFES KGDAGASKTY PQQAGTIRKN GYIVIKSRPC KVVEVSTSKT GKHGHAKCHF VGIDIFNGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTENGN TKDDLRLPTD DNLLTQIKDG FAEGKDLVVS VMSAMGEEQI CALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.