Factsheet for Solyc04g005510.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g011000.2.1	Tomato	extracellular	99.37	99.37
PGSC0003DMT400007325	Potato	cytosol, mitochondrion	98.74	98.74
Solyc05g006890.1.1	Tomato	cytosol, nucleus	98.11	98.11
TraesCS5A01G104800.1	Wheat	cytosol	96.23	95.62
Os12t0507200-01	Rice	plasma membrane, plastid	93.08	92.5
VIT_17s0000g06670.t01	Wine grape	cytosol	92.45	92.45
KRH63282	Soybean	nucleus	92.45	91.88
KRH56874	Soybean	cytosol	92.45	91.88
KRH54605	Soybean	cytosol	92.45	91.88
KRH03532	Soybean	cytosol	92.45	91.88
Solyc07g005560.2.1	Tomato	cytosol, nucleus, plastid	91.19	90.62
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	90.57	90.0
AT1G13950.1	Thale cress	cytosol	89.31	89.87
Solyc03g115650.2.1	Tomato	cytosol, extracellular, nucleus	91.19	89.51
Os03t0758800-01	Rice	nucleus, plasma membrane	90.57	89.44
KXG37504	Sorghum	cytosol	89.94	89.38
Solyc12g010060.1.1	Tomato	nucleus	89.31	88.75
TraesCS5D01G116200.2	Wheat	cytosol	94.97	87.28
KXG36613	Sorghum	cytosol	86.79	86.25
AT1G69410.1	Thale cress	cytosol	84.91	85.44
KRH00098	Soybean	cytosol	42.14	84.81
Os07t0112800-01	Rice	nucleus	85.53	83.95
KXG34269	Sorghum	cytosol	83.65	82.61
TraesCS2D01G190400.1	Wheat	cytosol	81.76	81.25
TraesCS2A01G262500.1	Wheat	cytosol	81.13	80.12
TraesCS2D01G261500.1	Wheat	nucleus	81.13	80.12
AT1G26630.1	Thale cress	cytosol	77.36	77.36
KRH00097	Soybean	cytosol	35.85	77.03
HORVU5Hr1G028360.3	Barley	mitochondrion	95.6	76.0
HORVU2Hr1G063210.3	Barley	cytosol	77.99	72.09
TraesCS2A01G182600.1	Wheat	mitochondrion	66.67	60.92
GSMUA_Achr6P07860_001	Banana	nucleus	20.75	9.22

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	UniProt:K4BNF7	InterPro:NA-bd_OB-fold
PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2
SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc04g005510.2	EnsemblPlants:Solyc04g005510.2.1	TIGRFAMs:TIGR00037
InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00027663E4	:	:

Description

Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:K4BNF7]

Coordinates

chr4:+:342519..345154

Molecular Weight (calculated)

17386.5 Da

IEP (calculated)

5.576

GRAVY (calculated)

-0.456

Length

159 amino acids

Sequence
(BLAST)

001: MSDEEHQFES KADAGASKTY PQQAGTIRKN GYIVIKARPC KVVEVSTSKT GKHGHAKCHF VAIDIFTGKK LEDIVPSSHN CDVPHVNRTD YQLIDISEDG
101: FVSLLTDNGN TKDDLRLPTD ENLLSLIKDG FAEGKDLVVS VMSAMGEEQI NALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.