Factsheet for TraesCS5B01G108600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
plastid: 22736107

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G104800.1	Wheat	cytosol	100.0	100.0
Os12t0507200-01	Rice	plasma membrane, plastid	93.12	93.12
TraesCS5D01G116200.2	Wheat	cytosol	98.75	91.33
TraesCS2B01G279600.1	Wheat	cytosol	81.25	80.75
HORVU5Hr1G028360.3	Barley	mitochondrion	99.38	79.5
TraesCS2B01G209100.1	Wheat	cytosol, mitochondrion	84.38	67.5
TraesCS6B01G411200.1	Wheat	mitochondrion	65.62	61.4

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006452	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0043022
GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	InterPro:NA-bd_OB-fold	PFAM:PF01287
PIRSF:PIRSF003025	ScanProsite:PS00302	PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376
SUPFAM:SSF50104	SUPFAM:SSF50249	TIGRFAMs:TIGR00037	EnsemblPlantsGene:TraesCS5B01G108600	EnsemblPlants:TraesCS5B01G108600.1	InterPro:Trans_elong_IF5A_hypusine_site
InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	TIGR:cd04468	:	:	:

Description

No Description!

Coordinates

chr5B:-:147468783..147471404

Molecular Weight (calculated)

17474.6 Da

IEP (calculated)

5.580

GRAVY (calculated)

-0.513

Length

160 amino acids

Sequence
(BLAST)

001: MSDSEEHQFE SKADAGASKT YPQQAGTIRK NGYIVIKNRP CKVVEVSTSK TGKHGHAKCH FVAIDIFTGK KLEDIVPSSH NCDVPHVNRT EYQLIDISED
101: GFVSLLTDNG NTKDDLKLPT DETLLGQIKD GFAEGKDLVV SVMSAMGEEQ INALKDIGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.