Factsheet for Zm00001d022042_P006

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d006760_P001	Maize	cytosol	100.0	100.0
KXG36613	Sorghum	cytosol	98.12	98.12
Os07t0597000-01	Rice	cytosol, extracellular, plasma membrane	91.25	91.25
TraesCS2D01G190400.1	Wheat	cytosol	83.12	83.12
Zm00001d007940_P002	Maize	cytosol, extracellular	82.5	82.5
TraesCS2B01G209100.1	Wheat	cytosol, mitochondrion	81.88	65.5
TraesCS2A01G182600.1	Wheat	mitochondrion	68.75	63.22
Zm00001d013648_P001	Maize	plastid	58.75	41.23

Protein Annotations

MapMan:17.5.3.1	Gene3D:2.30.30.30	Gene3D:2.40.50.140	EntrezGene:542537	EntrezGene:542601	EMBL:AF034943
UniProt:B6SIL7	EMBL:BT084495	EMBL:EU952582	EMBL:EU958725	EMBL:EU958968	EMBL:EU959407
EMBL:EU959849	EMBL:EU960315	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0003746	GO:GO:0005488	GO:GO:0006412	GO:GO:0006413	GO:GO:0006452	GO:GO:0008135
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0043022	GO:GO:0045901	GO:GO:0045905	InterPro:IF5A-like	InterPro:IPR014722	EMBL:JF808080
InterPro:NA-bd_OB-fold	ProteinID:ONM24973.1	ProteinID:ONM24975.1	ProteinID:ONM59384.1	ProteinID:ONM59389.1	ProteinID:ONM59390.1
ProteinID:ONM59391.1	ProteinID:ONM59393.1	UniProt:P80639	PFAM:PF01287	PIRSF:PIRSF003025	ScanProsite:PS00302
PANTHER:PTHR11673	PANTHER:PTHR11673:SF22	InterPro:Rib_L2_dom2	SMART:SM01376	SUPFAM:SSF50104	SUPFAM:SSF50249
TIGRFAMs:TIGR00037	InterPro:Trans_elong_IF5A_hypusine_site	InterPro:Transl_elong_IF5A_C	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000012D390	EMBL:Y07920
EnsemblPlantsGene:Zm00001d022042	EnsemblPlants:Zm00001d022042_P006	EnsemblPlants:Zm00001d022042_T006	:	:	:

Description

eukaryotic translation initiation factor 5AEukaryotic translation initiation factor 5A

Coordinates

chr7:-:168491817..168494907

Molecular Weight (calculated)

17497.6 Da

IEP (calculated)

5.871

GRAVY (calculated)

-0.487

Length

160 amino acids

Sequence
(BLAST)

001: MSDSEEHHFE SKADAGASKT YPQQAGTVRK NGFIVIKNRP CKVVEVSTSK TGKHGHAKCH FVAIDIFNGK KLEDIVPSSH NCDIPHVNRT EYQLIDISED
101: GFVSLLTSDG NTKDDLRLPT DETLVAQIKE GFESGKDLVV TVQSAMGEEQ ICALKDVGPK

Best Arabidopsis Sequence Match ( AT1G13950.1 )
(BLAST)

001: MSDEEHHFES SDAGASKTYP QQAGTIRKNG YIVIKNRPCK VVEVSTSKTG KHGHAKCHFV AIDIFTSKKL EDIVPSSHNC DVPHVNRTDY QLIDISEDGY
101: VSLLTDNGST KDDLKLPNDD TLLQQIKSGF DDGKDLVVSV MSAMGEEQIN ALKDIGPK

Arabidopsis Description

ELF5A-1Eukaryotic translation initiation factor 5A [Source:UniProtKB/TrEMBL;Acc:A0A178WBN7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.