Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P21190_001 | Banana | cytosol, nucleus, plastid | 51.43 | 86.75 |
| Bra025176.1-P | Field mustard | cytosol | 47.14 | 69.47 |
| CDY04187 | Canola | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 85.71 | 57.42 |
| CDY39177 | Canola | cytosol | 85.0 | 56.94 |
| KRG97470 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 81.43 | 55.07 |
| VIT_01s0010g02430.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 80.71 | 54.59 |
| AT3G25980.1 | Thale cress | cytosol | 81.43 | 54.55 |
| PGSC0003DMT400045025 | Potato | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 80.71 | 54.33 |
| KRH31421 | Soybean | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 80.0 | 54.11 |
| Solyc05g014370.2.1 | Tomato | mitochondrion | 79.29 | 53.37 |
| Os04t0486500-01 | Rice | mitochondrion | 75.71 | 51.21 |
| EES12410 | Sorghum | mitochondrion | 73.57 | 49.76 |
| Zm00001d025721_P001 | Maize | mitochondrion | 74.29 | 48.37 |
| TraesCS2A01G320000.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 70.0 | 47.34 |
| TraesCS2B01G363300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 70.0 | 47.34 |
| TraesCS2D01G343300.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 70.0 | 47.34 |
| HORVU2Hr1G084050.1 | Barley | plastid | 70.0 | 36.03 |
| KRH08024 | Soybean | cytosol | 16.43 | 21.5 |
| Zm00001d003249_P001 | Maize | mitochondrion | 62.14 | 18.28 |
Protein Annotations
| EnsemblPlants:CDX83576 | EnsemblPlantsGene:GSBRNA2T00139230001 | Gene3D:3.30.900.10 | GO:A0A078D2I7 | GO:GO:0007049 | GO:GO:0007094 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:HORMA_dom | InterPro:HORMA_dom_sf | InterPro:IPR003511 |
| InterPro:IPR036570 | InterPro:Mad2 | PANTHER:PTHR11842 | PANTHER:PTHR11842:SF11 | PFscan:PS50815 | ProteinID:CDX83576 |
| ProteinID:CDX83576.1 | SignalP:SignalP-noTM | SUPFAM:SSF56019 | UniParc:UPI0004EE1D3C | MapMan:13.3.5.5.4 | : |
Description
BnaC07g23160D
Coordinates
chrLK031833:+:793529..794338
Molecular Weight (calculated)
16164.4 Da
IEP (calculated)
4.593
GRAVY (calculated)
-0.184
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MILKNITSLL QIFLFPFIKL ITDSKSTGEV LERWNFRIET DSEVVEKGVS REKSDKEIMR EIQATMRQVA SSITYLPCLD EPCVFDVLAY TDTDVAVPFT
101: WVESDPKLIA NPQMVKLHAF DTKIHKVDTL VSHKNDEWDE
101: WVESDPKLIA NPQMVKLHAF DTKIHKVDTL VSHKNDEWDE
001: MASKTAAAKD IITLHGSAAI VSEFFCYAAN SILYNRAVYP EESFVKVKKY GLPMLLIEDE SVKSFMSNLT SQISEWLEAG KLQRVVLVIM SKATGEVLER
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
101: WNFRIETDNE VVDKGVSREK SDKEIMREIQ AIMRQVASSV TYLPCLDETC VFDVLAYTDT DVAVPFTWIE SDPKLIANPQ MVKLHGFDTK IHKVDTLVSY
201: KNDEWDEEE
Arabidopsis Description
MAD2Mitotic spindle checkpoint protein MAD2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU93]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.