CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75060	Canola	plastid	79.22	77.22
CDX79665	Canola	plastid	76.95	76.95
CDX84571	Canola	plastid	76.95	76.95
AT2G36230.1	Thale cress	mitochondrion, plastid	75.0	75.99
Os05t0400800-02	Rice	plastid	36.04	72.08
GSMUA_Achr10P...	Banana	cytosol	42.21	71.04
KRH32745	Soybean	cytosol, mitochondrion	37.66	66.29
KRH20063	Soybean	mitochondrion, plastid	65.91	65.7
PGSC0003DMT400059985	Potato	plastid	66.23	65.59
VIT_08s0007g03280.t01	Wine grape	plastid	66.88	64.98
Solyc05g056150.2.1	Tomato	plastid	65.26	64.42
EER92112	Sorghum	mitochondrion	61.36	61.56
TraesCS1A01G251000.1	Wheat	plastid	61.04	61.24
EES18196	Sorghum	mitochondrion	60.71	60.91
TraesCS1B01G261600.1	Wheat	plastid	60.71	60.91
TraesCS1D01G250600.1	Wheat	plastid	60.71	60.91
GSMUA_Achr10P...	Banana	cytosol	9.09	59.57
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	29.55	55.83
HORVU3Hr1G016160.2	Barley	plastid	35.71	51.89
Zm00001d029548_P007	Maize	cytosol, mitochondrion	61.36	50.94
Zm00001d038142_P034	Maize	plastid	61.04	50.67
GSMUA_Achr10P...	Banana	plastid	20.13	44.6
OQU86211	Sorghum	mitochondrion	14.94	42.2
HORVU7Hr1G068820.1	Barley	plastid	10.06	27.68

Protein Annotations

KEGG:00340+5.3.1.16	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	GO:A0A078D4V1	InterPro:Aldolase_TIM	EnsemblPlants:CDX84147
ProteinID:CDX84147	ProteinID:CDX84147.1	GO:GO:0000105	GO:GO:0003674	GO:GO:0003824	GO:GO:0003949
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00141165001	InterPro:HisA_euk
InterPro:His_biosynth	InterPro:IPR013785	PFAM:PF00977	PANTHER:PTHR43090	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR02129	UniPathway:UPA00031	UniParc:UPI0004EE04EF	:	:	:

Description

BnaC04g09090D

Coordinates

chrLK031836:+:185239..186879

Molecular Weight (calculated)

33561.0 Da

IEP (calculated)

5.221

GRAVY (calculated)

-0.162

Length

308 amino acids

Sequence
(BLAST)

001: MVESLLSTRT IALVEQPSQT LRTTVSHQDK TTLEGTSHVR CSFQTLHRHP QVKQIVGSTL SDLKEDGSVL VTNFESDKSA EEYARMYKED GLTGGHVIML
101: GADPLSQAAA LGALHAYPGG LQVGGGISSE NCLSYIEEGA SHVIVTSHVF NNGKLDLERL KDLVKIVGKQ RLILDVSCRE KDGRRYAIVT DRWQKFSDVL
201: LDEKSLEFLG GFADEFLVHG VDVEGKKLGI DEELVALLGN YSPIPVTYAG GVTVMEDVER IKEAGKGGVD VTVGSALDIF GGNLPYKDVV AWHHQQQELF
301: STPLKTPI

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.