CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G068820.1	Barley	plastid	34.86	33.93
GSMUA_Achr10P...	Banana	plastid	43.12	33.81
HORVU3Hr1G016160.2	Barley	plastid	58.72	30.19
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	44.95	30.06
EES18196	Sorghum	mitochondrion	80.73	28.66
EER92112	Sorghum	mitochondrion	75.23	26.71
TraesCS1B01G261600.1	Wheat	plastid	66.06	23.45
TraesCS1D01G250600.1	Wheat	plastid	65.14	23.13
TraesCS1A01G251000.1	Wheat	plastid	65.14	23.13
Zm00001d038142_P034	Maize	plastid	72.48	21.29
CDX84571	Canola	plastid	46.79	16.56
Bra023056.1-P	Field mustard	plastid	46.79	16.56
AT2G36230.1	Thale cress	mitochondrion, plastid	45.87	16.45
Bra005290.1-P	Field mustard	plastid	46.79	16.14
CDX79665	Canola	plastid	44.95	15.91
CDX75060	Canola	plastid	45.87	15.82
VIT_08s0007g03280.t01	Wine grape	plastid	45.87	15.77
KRH20063	Soybean	mitochondrion, plastid	44.04	15.53
Solyc05g056150.2.1	Tomato	plastid	44.04	15.38
PGSC0003DMT400059985	Potato	plastid	43.12	15.11
CDX84147	Canola	cytosol, plastid	42.2	14.94
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
GSMUA_Achr10P...	Banana	cytosol	0.0	0.0
KRH32745	Soybean	cytosol, mitochondrion	0.0	0.0
Os05t0400800-02	Rice	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:OQU86211	EnsemblPlantsGene:SORBI_3003G045450	ProteinID:OQU86211	ProteinID:OQU86211.1	SEG:seg	UniParc:UPI0009DC83C2
UniProt:A0A1W0VVS9	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:4154430..4155113

Molecular Weight (calculated)

11910.2 Da

IEP (calculated)

5.136

GRAVY (calculated)

-0.158

Length

109 amino acids

Sequence
(BLAST)

001: MASNCAARVP SPRRAPRRVW AGPWVSVRPA KCGASCRYLC GKVKQIVGST LWDSSNDGME LVTNFESDKS LAEFYKEDEL LGDLEDIVIM FGADPASQAV
101: ALEALRAYP

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.