Factsheet for GSMUA_Achr10P24270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
peroxisome 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	87.23	22.4
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	70.21	20.25
KRH32745	Soybean	cytosol, mitochondrion	63.83	17.14
HORVU3Hr1G016160.2	Barley	plastid	72.34	16.04
Os05t0400800-02	Rice	plastid	46.81	14.29
TraesCS1A01G251000.1	Wheat	plastid	72.34	11.07
TraesCS1B01G261600.1	Wheat	plastid	72.34	11.07
TraesCS1D01G250600.1	Wheat	plastid	72.34	11.07
EER92112	Sorghum	mitochondrion	72.34	11.07
EES18196	Sorghum	mitochondrion	72.34	11.07
AT2G36230.1	Thale cress	mitochondrion, plastid	63.83	9.87
VIT_08s0007g03280.t01	Wine grape	plastid	65.96	9.78
CDX84571	Canola	plastid	63.83	9.74
CDX79665	Canola	plastid	63.83	9.74
Bra023056.1-P	Field mustard	plastid	63.83	9.74
KRH20063	Soybean	mitochondrion, plastid	63.83	9.71
CDX75060	Canola	plastid	63.83	9.49
Zm00001d038142_P034	Maize	plastid	74.47	9.43
PGSC0003DMT400059985	Potato	plastid	61.7	9.32
Solyc05g056150.2.1	Tomato	plastid	61.7	9.29
Bra005290.1-P	Field mustard	plastid	61.7	9.18
Zm00001d029548_P007	Maize	cytosol, mitochondrion	72.34	9.16
CDX84147	Canola	cytosol, plastid	59.57	9.09
HORVU7Hr1G068820.1	Barley	plastid	4.26	1.79
OQU86211	Sorghum	mitochondrion	0.0	0.0
GSMUA_Achr10P...	Banana	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr10P24270_001	EnsemblPlants:GSMUA_Achr10T24270_001	EnsemblPlantsGene:GSMUA_Achr10G24270_001	Gene3D:3.20.20.70	GO:GO:0003674	GO:GO:0003824
InterPro:Aldolase_TIM	InterPro:IPR013785	UniParc:UPI00029538F8	UniProt:M0RL02	MapMan:35.2	:

Description

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr10G24270_001]

Coordinates

chr10:-:28704307..28705123

Molecular Weight (calculated)

5396.6 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.123

Length

47 amino acids

Sequence
(BLAST)

1: MNYLEEGASH VIVTSYIFSD GKMNPERLKH LVNMIDKNRL VLDLSCT

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.