Factsheet for PGSC0003DMT400059985

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056150.2.1	Tomato	plastid	92.93	92.63
GSMUA_Achr10P...	Banana	cytosol	43.41	73.77
VIT_08s0007g03280.t01	Wine grape	plastid	73.95	72.56
Os05t0400800-02	Rice	plastid	35.69	72.08
AT2G36230.1	Thale cress	mitochondrion, plastid	70.1	71.71
Bra023056.1-P	Field mustard	plastid	69.45	70.13
CDX84571	Canola	plastid	69.13	69.81
CDX79665	Canola	plastid	68.81	69.48
Bra005290.1-P	Field mustard	plastid	70.42	69.3
KRH20063	Soybean	mitochondrion, plastid	68.49	68.93
CDX75060	Canola	plastid	69.13	68.04
KRH32745	Soybean	cytosol, mitochondrion	37.94	67.43
CDX84147	Canola	cytosol, plastid	65.59	66.23
EER92112	Sorghum	mitochondrion	64.31	65.15
TraesCS1D01G250600.1	Wheat	plastid	63.67	64.5
TraesCS1A01G251000.1	Wheat	plastid	63.67	64.5
TraesCS1B01G261600.1	Wheat	plastid	63.34	64.17
EES18196	Sorghum	mitochondrion	63.02	63.84
GSMUA_Achr10P...	Banana	cytosol	9.32	61.7
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	30.87	58.9
HORVU3Hr1G016160.2	Barley	plastid	37.62	55.19
Zm00001d029548_P007	Maize	cytosol, mitochondrion	63.34	53.1
Zm00001d038142_P034	Maize	plastid	63.34	53.1
GSMUA_Achr10P...	Banana	plastid	22.83	51.08
OQU86211	Sorghum	mitochondrion	15.11	43.12
HORVU7Hr1G068820.1	Barley	plastid	13.83	38.39

Protein Annotations

KEGG:00340+5.3.1.16	EntrezGene:102583281	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	InterPro:Aldolase_TIM	GO:GO:0000105
GO:GO:0003674	GO:GO:0003824	GO:GO:0003949	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016853	InterPro:HisA_euk	InterPro:His_biosynth	InterPro:IPR013785
UniProt:M1C508	PFAM:PF00977	EnsemblPlantsGene:PGSC0003DMG400023338	PGSC:PGSC0003DMG400023338	EnsemblPlants:PGSC0003DMT400059985	PANTHER:PTHR43090
InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR02129	UniParc:UPI0002948518	RefSeq:XP_006345788.1	:

Description

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400023338]

Coordinates

chr5:-:51678579..51685384

Molecular Weight (calculated)

33689.4 Da

IEP (calculated)

5.613

GRAVY (calculated)

0.005

Length

311 amino acids

Sequence
(BLAST)

001: MQTSASSLQS LFWGKNLSYA PYTFSRTLDF IPAMTSPPLG PQRLSVQCGV GFRPCIDIHK GKVKQIVGST LRDSKEADTS LVTNFESDKS AAEYAKLYRD
101: DGLVGGHVIM LGADPLSIAA ATEALHAYPG GLQVGGGIKT ENALSYIEEG ASHVIVTSYV FNNGQMDLER LKELSSLVGR KRLVLDLSCR KKEGEYVIVT
201: DRWQKFSDVH LNEKVLNFLA EYADEFLVHG VDVEGKKLGI DEELVALLGK YSPIPVTYAG GVTVMADLEK IKVAGMGHVD VTVGSALDIF GGNLAYKDVV
301: AWHSLQDSIA V

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.