Factsheet for TraesCS1A01G251000.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G261600.1	Wheat	plastid	99.02	99.02
TraesCS1D01G250600.1	Wheat	plastid	98.05	98.05
Os05t0400800-02	Rice	plastid	43.97	87.66
HORVU3Hr1G016160.2	Barley	plastid	59.93	86.79
EER92112	Sorghum	mitochondrion	83.39	83.39
EES18196	Sorghum	mitochondrion	82.74	82.74
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	41.04	77.3
GSMUA_Achr10P...	Banana	cytosol	43.97	73.77
GSMUA_Achr10P...	Banana	cytosol	11.07	72.34
HORVU7Hr1G068820.1	Barley	plastid	25.08	68.75
Zm00001d038142_P034	Maize	plastid	80.78	66.85
AT2G36230.1	Thale cress	mitochondrion, plastid	66.12	66.78
CDX84571	Canola	plastid	65.47	65.26
CDX79665	Canola	plastid	65.47	65.26
Bra023056.1-P	Field mustard	plastid	65.47	65.26
Zm00001d029548_P007	Maize	cytosol, mitochondrion	78.83	65.23
Bra005290.1-P	Field mustard	plastid	67.1	65.19
OQU86211	Sorghum	mitochondrion	23.13	65.14
VIT_08s0007g03280.t01	Wine grape	plastid	67.1	64.98
CDX75060	Canola	plastid	66.78	64.87
KRH20063	Soybean	mitochondrion, plastid	64.82	64.4
Solyc05g056150.2.1	Tomato	plastid	65.15	64.1
PGSC0003DMT400059985	Potato	plastid	64.5	63.67
CDX84147	Canola	cytosol, plastid	61.24	61.04
KRH32745	Soybean	cytosol, mitochondrion	34.53	60.57
GSMUA_Achr10P...	Banana	plastid	24.1	53.24

Protein Annotations

EnsemblPlants:TraesCS1A01G251000.1	EnsemblPlantsGene:TraesCS1A01G251000	Gene3D:3.20.20.70	GO:GO:0000105	GO:GO:0003674	GO:GO:0003824
GO:GO:0003949	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Aldolase_TIM
InterPro:HisA_euk	InterPro:His_biosynth	InterPro:IPR013785	InterPro:RibuloseP-bd_barrel	KEGG:00340+5.3.1.16	PANTHER:PTHR43090
PFAM:PF00977	SUPFAM:SSF51366	TIGR:cd04723	TIGRFAMs:TIGR02129	MapMan:4.1.1.2.4	:

Description

No Description!

Coordinates

chr1A:+:442563512..442567349

Molecular Weight (calculated)

33002.3 Da

IEP (calculated)

6.789

GRAVY (calculated)

-0.192

Length

307 amino acids

Sequence
(BLAST)

001: MASRCAARLP HPPCAAPQHG WASSRVSARP AQSGASRGRA VACAVSFRPC IDIHKGKVKQ IVGSTLRDAS DDGTALVTNF ESDKSPAEFA NIYKEDGLVG
101: GHVIMLGGDP ASRSAALEAL HAYPGGLQVG GGINLENAMS YLNEGASHVI VTSYVFSDGK MNIERLTQLV ELVGKQRLIL DLSCRKKDGR YAIVTDRWQK
201: FSDVFVDGPT LERLAAYADE FLVHGVDVEG KRLGIDEELV ELLGSHSPIP TTYAGGVSTM DDLERIKKAG KGRVDVTVGS ALDIFGGDLP YDTVVRWHKE
301: QNLVSQR

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.