CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84571	Canola	plastid	95.45	95.45
AT2G36230.1	Thale cress	mitochondrion, plastid	87.01	88.16
CDX75060	Canola	plastid	88.64	86.39
CDX84147	Canola	cytosol, plastid	76.95	76.95
Os05t0400800-02	Rice	plastid	37.34	74.68
KRH20063	Soybean	mitochondrion, plastid	72.73	72.49
GSMUA_Achr10P...	Banana	cytosol	42.53	71.58
KRH32745	Soybean	cytosol, mitochondrion	39.94	70.29
PGSC0003DMT400059985	Potato	plastid	69.48	68.81
Solyc05g056150.2.1	Tomato	plastid	69.48	68.59
VIT_08s0007g03280.t01	Wine grape	plastid	70.45	68.45
EES18196	Sorghum	mitochondrion	66.56	66.78
EER92112	Sorghum	mitochondrion	66.23	66.45
TraesCS1D01G250600.1	Wheat	plastid	65.58	65.8
TraesCS1A01G251000.1	Wheat	plastid	65.26	65.47
TraesCS1B01G261600.1	Wheat	plastid	64.94	65.15
GSMUA_Achr10P...	Banana	cytosol	9.74	63.83
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	31.49	59.51
HORVU3Hr1G016160.2	Barley	plastid	38.31	55.66
Zm00001d038142_P034	Maize	plastid	66.56	55.26
Zm00001d029548_P007	Maize	cytosol, mitochondrion	66.23	54.99
GSMUA_Achr10P...	Banana	plastid	22.4	49.64
OQU86211	Sorghum	mitochondrion	15.91	44.95
HORVU7Hr1G068820.1	Barley	plastid	12.99	35.71

Protein Annotations

KEGG:00340+5.3.1.16	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	GO:A0A078CS75	InterPro:Aldolase_TIM	EnsemblPlants:CDX79665
ProteinID:CDX79665	ProteinID:CDX79665.1	GO:GO:0000105	GO:GO:0003674	GO:GO:0003824	GO:GO:0003949
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00132460001	InterPro:HisA_euk
InterPro:His_biosynth	InterPro:IPR013785	PFAM:PF00977	PANTHER:PTHR43090	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR02129	UniPathway:UPA00031	UniParc:UPI0004EF1680	:	:	:

Description

BnaC03g20010D

Coordinates

chrLK031818:-:1454579..1456536

Molecular Weight (calculated)

33518.1 Da

IEP (calculated)

6.245

GRAVY (calculated)

-0.171

Length

308 amino acids

Sequence
(BLAST)

001: MRTFSSQLYS NGGISLLNKK QISPSKKHLN FSRPSGVQVI SAVQFRPCID IHKGKVKQIV GSTLSDLKEE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAFGALH AYPGGLQVGG GINSENCLSY IEEGASHVIV TSYVFNNGKL DLERLKDLVK IVGKERLILD LSCRKKDGRY AIVTDRWQKF
201: SDVLVDEKSM EFLGGFADEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIREAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: AEPASTLH

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.