Factsheet for VIT_08s0007g03280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	43.53	75.41
Solyc05g056150.2.1	Tomato	plastid	73.5	74.68
Os05t0400800-02	Rice	plastid	35.96	74.03
PGSC0003DMT400059985	Potato	plastid	72.56	73.95
KRH20063	Soybean	mitochondrion, plastid	71.61	73.46
AT2G36230.1	Thale cress	mitochondrion, plastid	70.35	73.36
Bra023056.1-P	Field mustard	plastid	69.09	71.1
CDX84571	Canola	plastid	68.77	70.78
CDX75060	Canola	plastid	70.35	70.57
CDX79665	Canola	plastid	68.45	70.45
Bra005290.1-P	Field mustard	plastid	69.72	69.94
KRH32745	Soybean	cytosol, mitochondrion	38.17	69.14
EER92112	Sorghum	mitochondrion	65.3	67.43
TraesCS1A01G251000.1	Wheat	plastid	64.98	67.1
CDX84147	Canola	cytosol, plastid	64.98	66.88
TraesCS1D01G250600.1	Wheat	plastid	64.67	66.78
TraesCS1B01G261600.1	Wheat	plastid	64.67	66.78
GSMUA_Achr10P...	Banana	cytosol	9.78	65.96
EES18196	Sorghum	mitochondrion	63.41	65.47
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	32.49	63.19
HORVU3Hr1G016160.2	Barley	plastid	38.8	58.02
Zm00001d029548_P007	Maize	cytosol, mitochondrion	64.35	54.99
Zm00001d038142_P034	Maize	plastid	64.04	54.72
GSMUA_Achr10P...	Banana	plastid	23.97	54.68
OQU86211	Sorghum	mitochondrion	15.77	45.87
HORVU7Hr1G068820.1	Barley	plastid	14.2	40.18

Protein Annotations

KEGG:00340+5.3.1.16	EntrezGene:100251095	wikigene:100251095	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	EMBL:AM433855
InterPro:Aldolase_TIM	ProteinID:CAN62764	ProteinID:CAN62764.1	ProteinID:CBI30299	ProteinID:CBI30299.3	UniProt:D7TJ73
EMBL:FN595991	GO:GO:0000105	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0003949
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016853
InterPro:HisA_euk	InterPro:His_biosynth	InterPro:IPR013785	EntrezGene:LOC100251095	wikigene:LOC100251095	PFAM:PF00977
PANTHER:PTHR43090	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366	TIGRFAMs:TIGR02129	UniParc:UPI0001BE3948	ArrayExpress:VIT_08s0007g03280
EnsemblPlantsGene:VIT_08s0007g03280	EnsemblPlants:VIT_08s0007g03280.t01	RefSeq:XP_002276674	RefSeq:XP_002276674.1	RefSeq:XP_010654089.1	:

Description

1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/TrEMBL;Acc:D7TJ73]

Coordinates

chr8:-:17272075..17277667

Molecular Weight (calculated)

34337.2 Da

IEP (calculated)

7.266

GRAVY (calculated)

-0.096

Length

317 amino acids

Sequence
(BLAST)

001: MMRARSPHAT SSCNLGWLSG RPSSTFHGVN LNASRLNTAM PSPISKPLRL SVRCAVRFRP CIDIHKGKVK QIVGSTLRDT KEGGSTLVTN FESDKSAAEF
101: AKLYKEDGLT GGHVIMLGAD PLSTSAATEA LHAYPGGLQV GGGINSENAL RYIEEGASHV IVTSYVFNNG QMDLERLKDL VHLVGKQRLV LDLSCRKKEG
201: KYAIVTDRWQ KFSDVCLDQE ILDFLASYSD EFLVHGVDVE GKKLGIDEEL VALLGKYSPI PVTYAGGVTV MADLERIKVA GSGRVDVTVG SALDIFGGNL
301: AYRDVVNWHA QQEALTV

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.