CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92112	Sorghum	mitochondrion	93.49	93.49
Os05t0400800-02	Rice	plastid	43.65	87.01
TraesCS1D01G250600.1	Wheat	plastid	83.06	83.06
TraesCS1B01G261600.1	Wheat	plastid	82.74	82.74
TraesCS1A01G251000.1	Wheat	plastid	82.74	82.74
OQU86211	Sorghum	mitochondrion	28.66	80.73
Zm00001d038142_P034	Maize	plastid	92.18	76.28
GSMUA_Achr10P...	Banana	cytosol	44.3	74.32
GSMUA_Achr10P...	Banana	cytosol	11.07	72.34
HORVU3Hr1G016160.2	Barley	plastid	48.21	69.81
AT2G36230.1	Thale cress	mitochondrion, plastid	67.1	67.76
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	35.5	66.87
CDX79665	Canola	plastid	66.78	66.56
Bra023056.1-P	Field mustard	plastid	66.78	66.56
CDX84571	Canola	plastid	66.45	66.23
CDX75060	Canola	plastid	67.43	65.51
Bra005290.1-P	Field mustard	plastid	67.43	65.51
Solyc05g056150.2.1	Tomato	plastid	64.82	63.78
KRH20063	Soybean	mitochondrion, plastid	64.17	63.75
VIT_08s0007g03280.t01	Wine grape	plastid	65.47	63.41
PGSC0003DMT400059985	Potato	plastid	63.84	63.02
CDX84147	Canola	cytosol, plastid	60.91	60.71
KRH32745	Soybean	cytosol, mitochondrion	34.53	60.57
GSMUA_Achr10P...	Banana	plastid	23.45	51.8
HORVU7Hr1G068820.1	Barley	plastid	18.57	50.89

Protein Annotations

KEGG:00340+5.3.1.16	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	EntrezGene:8085102	InterPro:Aldolase_TIM	UniProt:C5YXM8
EnsemblPlants:EES18196	ProteinID:EES18196	ProteinID:EES18196.1	GO:GO:0000105	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0003949	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016853	InterPro:HisA_euk	InterPro:His_biosynth	InterPro:IPR013785	ProteinID:OQU77956.1
PFAM:PF00977	PANTHER:PTHR43090	InterPro:RibuloseP-bd_barrel	EnsemblPlantsGene:SORBI_3009G130500	SUPFAM:SSF51366	TIGRFAMs:TIGR02129
UniParc:UPI0001A88E2E	RefSeq:XP_002439766.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:48379201..48384462

Molecular Weight (calculated)

33516.3 Da

IEP (calculated)

8.309

GRAVY (calculated)

-0.140

Length

307 amino acids

Sequence
(BLAST)

001: MASKWAARVP SPRWAARRGW VGSWVSVRPA KCGASGGRAV VCAAVSFRPC IDIHKGKVKQ IVGSTLRDSS NDGMELVTNF ESDKSPAEFA KFYKEDELLG
101: GHVIMLGADP ASQAAALEAL RAYPGGLQLG GGINLENAMS YLNEGASHVI VTSYVFSDGK MNTERLRKLV KLVGKQKLVL DLSCRKKDGR YTIVTDRWQK
201: FSDVFVDEPT LEYLAAFADE FLVHGVDVEG KRLGIDEELV ELLGHHSPIP VTYAGGVSTI DDLERIKKAG KSRVDVTVGS ALDIFGGDLP YKDVVLWHKK
301: QSMFSQV

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.