CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18196	Sorghum	mitochondrion	93.49	93.49
Os05t0400800-02	Rice	plastid	43.65	87.01
TraesCS1D01G250600.1	Wheat	plastid	83.71	83.71
TraesCS1B01G261600.1	Wheat	plastid	83.39	83.39
TraesCS1A01G251000.1	Wheat	plastid	83.39	83.39
GSMUA_Achr10P...	Banana	cytosol	45.28	75.96
OQU86211	Sorghum	mitochondrion	26.71	75.23
GSMUA_Achr10P...	Banana	cytosol	11.07	72.34
HORVU3Hr1G016160.2	Barley	plastid	49.19	71.23
Zm00001d029548_P007	Maize	cytosol, mitochondrion	85.34	70.62
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	36.48	68.71
AT2G36230.1	Thale cress	mitochondrion, plastid	66.78	67.43
CDX79665	Canola	plastid	66.45	66.23
Bra023056.1-P	Field mustard	plastid	66.45	66.23
CDX84571	Canola	plastid	66.12	65.91
KRH20063	Soybean	mitochondrion, plastid	65.8	65.37
VIT_08s0007g03280.t01	Wine grape	plastid	67.43	65.3
Bra005290.1-P	Field mustard	plastid	67.1	65.19
Solyc05g056150.2.1	Tomato	plastid	66.12	65.06
CDX75060	Canola	plastid	66.78	64.87
PGSC0003DMT400059985	Potato	plastid	65.15	64.31
KRH32745	Soybean	cytosol, mitochondrion	35.18	61.71
CDX84147	Canola	cytosol, plastid	61.56	61.36
GSMUA_Achr10P...	Banana	plastid	24.1	53.24
HORVU7Hr1G068820.1	Barley	plastid	18.89	51.79

Protein Annotations

KEGG:00340+5.3.1.16	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	EntrezGene:8066036	InterPro:Aldolase_TIM	UniProt:C5WWI2
EnsemblPlants:EER92112	ProteinID:EER92112	ProteinID:EER92112.1	GO:GO:0000105	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0003949	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016853	InterPro:HisA_euk	InterPro:His_biosynth	InterPro:IPR013785	PFAM:PF00977
PANTHER:PTHR43090	InterPro:RibuloseP-bd_barrel	EnsemblPlantsGene:SORBI_3001G334100	SUPFAM:SSF51366	TIGRFAMs:TIGR02129	UniParc:UPI0001A8205E
RefSeq:XP_002465114.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:62270721..62276003

Molecular Weight (calculated)

33260.2 Da

IEP (calculated)

7.920

GRAVY (calculated)

-0.032

Length

307 amino acids

Sequence
(BLAST)

001: MALKCAVRIP SPRWASRRGL VGSWVSLRPA KCGASGGRAV VCAAVSFRPC IDIHKGKVKQ IVGSTLRDSS NDGMELVTNF ESDKSPAEFA KLYKEDLLLG
101: GHVIMLGADP ASQAAALEAL HAYPGGLQVG GGINLENAMS YLNEGASHVI VTSYVFSDGK MNIESLRKLV ELVGKQRLVL DLSCRKKDGR YTIVTDRWQK
201: FSDVFVDKPT LEYLAAFADE FLVHGVDVEG KRLGIDEELV ELLGHHSPIP VTYAGGVSTM DDLERIKKAG KSRVDVTVGS ALDIFGGDLA YKDVVLWHKK
301: QSMVGQV

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.