CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32745	Soybean	cytosol, mitochondrion	44.66	78.86
GSMUA_Achr10P...	Banana	cytosol	43.69	73.77
Bra023056.1-P	Field mustard	plastid	72.49	72.73
CDX79665	Canola	plastid	72.49	72.73
Os05t0400800-02	Rice	plastid	36.25	72.73
CDX84571	Canola	plastid	72.17	72.4
VIT_08s0007g03280.t01	Wine grape	plastid	73.46	71.61
AT2G36230.1	Thale cress	mitochondrion, plastid	69.9	71.05
CDX75060	Canola	plastid	71.84	70.25
Bra005290.1-P	Field mustard	plastid	71.52	69.94
Solyc05g056150.2.1	Tomato	plastid	69.58	68.91
PGSC0003DMT400059985	Potato	plastid	68.93	68.49
CDX84147	Canola	cytosol, plastid	65.7	65.91
EER92112	Sorghum	mitochondrion	65.37	65.8
TraesCS1D01G250600.1	Wheat	plastid	64.4	64.82
TraesCS1B01G261600.1	Wheat	plastid	64.4	64.82
TraesCS1A01G251000.1	Wheat	plastid	64.4	64.82
EES18196	Sorghum	mitochondrion	63.75	64.17
GSMUA_Achr10P...	Banana	cytosol	9.71	63.83
HORVU5Hr1G030850.1	Barley	cytosol, peroxisome	29.77	56.44
HORVU3Hr1G016160.2	Barley	plastid	37.86	55.19
Zm00001d029548_P007	Maize	cytosol, mitochondrion	66.02	54.99
Zm00001d038142_P034	Maize	plastid	63.75	53.1
GSMUA_Achr10P...	Banana	plastid	23.3	51.8
OQU86211	Sorghum	mitochondrion	15.53	44.04
HORVU7Hr1G068820.1	Barley	plastid	13.59	37.5

Protein Annotations

KEGG:00340+5.3.1.16	EntrezGene:100793426	Gene3D:3.20.20.70	MapMan:4.1.1.2.4	EMBL:ACUP02008236	EMBL:ACUP02008237
InterPro:Aldolase_TIM	EnsemblPlantsGene:GLYMA_13G153700	GO:GO:0000105	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0003949	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016853	InterPro:HisA_euk	InterPro:His_biosynth	InterPro:IPR013785	UniProt:K7LZZ8	EnsemblPlants:KRH20063
ProteinID:KRH20063	ProteinID:KRH20063.1	PFAM:PF00977	PANTHER:PTHR43090	InterPro:RibuloseP-bd_barrel	SUPFAM:SSF51366
TIGRFAMs:TIGR02129	UniParc:UPI000233B0C0	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:26874732..26880802

Molecular Weight (calculated)

33336.9 Da

IEP (calculated)

5.858

GRAVY (calculated)

-0.040

Length

309 amino acids

Sequence
(BLAST)

001: MRSLAAPHSF RVFVNSPIFR PIKLPFLTLN PLSSPSRRSP ASVQCAVQFR PCIDIHKGKV KQIVGSTLQD LKGGDGSDPV TNFESDKSAA EYAALYKQDG
101: LTGGHVIMLG ADPLSKASAL EALHAYPGGL QVGGGINSDN CLSYIEEGAS HVIVTSYVFN NGQMDLGRLK DLVQIVGKDR LVLDLSCRKK DGKYAIVTDR
201: WQKFSDVFVD PDVMEFLANF ADEFLVHGVD VEGKKLGIDE ELVALLGKHS PIPVTYAGGV TEMSDLERIK TAGMDRVNVT VGSALDIFGG NLAYEEVVAW
301: HAQQNASAV

Best Arabidopsis Sequence Match ( AT2G36230.1 )
(BLAST)

001: MRTLSSQLYS NGGLTWFQKK NQSSLFIKHL RVSKPSRVQL ISAVQFRPCI DIHKGKVKQI VGSTLRDLKE DGSVLVTNFE SDKSAEEYAK MYKEDGLTGG
101: HVIMLGADPL SQAAAIGALH AYPGGLQVGG GINSENCMSY IEEGASHVIV TSYVFNNGKI DLERLKDIVS IVGKQRLILD LSCRKKDGRY AIVTDRWQKF
201: SDVILDEKSL EFLGGFSDEF LVHGVDVEGK KLGIDEELVA LLGNYSPIPV TYAGGVTVMD DVERIKDAGK GRVDVTVGSA LDIFGGNLPY KDVVAWHHKQ
301: HSLH

Arabidopsis Description

HISN31-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O82782]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.