CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010520.1-P	Field mustard	nucleus	100.0	100.0
CDY41637	Canola	nucleus	43.65	93.71
AT4G35740.1	Thale cress	nucleus	86.61	87.1
Os02t0780800-01	Rice	cytosol	30.96	68.94
VIT_11s0016g00850.t01	Wine grape	nucleus	62.62	62.27
KRH37506	Soybean	nucleus	62.48	60.22
Solyc07g042010.2.1	Tomato	nucleus	55.65	58.25
KXG31219	Sorghum	nucleus	54.95	52.39
GSMUA_Achr3P10310_001	Banana	endoplasmic reticulum, nucleus, plasma membrane	56.07	52.01
TraesCS6B01G371000.2	Wheat	nucleus	54.81	51.64
TraesCS6A01G339900.1	Wheat	nucleus	54.81	51.57
Zm00001d018287_P001	Maize	nucleus	52.44	51.02
TraesCS6D01G320500.1	Wheat	nucleus	54.53	50.52
CDY27743	Canola	nucleus	23.01	27.09
CDY66905	Canola	nucleus	22.87	26.93
CDY12420	Canola	nucleus	24.69	21.38
CDY03955	Canola	nucleus	21.34	16.61
CDY40476	Canola	nucleus	25.8	16.43
CDY12873	Canola	nucleus	25.8	16.39
CDY20972	Canola	nucleus	26.92	16.31
CDY34669	Canola	nucleus	26.22	16.22
CDY20595	Canola	nucleus	26.78	16.2
CDY34859	Canola	nucleus	25.66	16.2
CDY15702	Canola	nucleus	21.62	15.95
CDX80626	Canola	golgi, mitochondrion	16.46	15.67
CDX80633	Canola	nucleus	5.44	10.54
CDX80627	Canola	nucleus	5.44	10.48
CDY27742	Canola	mitochondrion	0.28	8.0
CDX89177	Canola	nucleus	1.53	4.12
CDX97959	Canola	nucleus	1.53	4.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078JFZ0	UniProt:A0A078JFZ0	EnsemblPlants:CDY64039	ProteinID:CDY64039
ProteinID:CDY64039.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00040824001
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFAM:PF16124	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710	PANTHER:PTHR13710:SF105
InterPro:RecQ_Zn-bd	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	TIGRFAMs:TIGR00614	UniParc:UPI0002545E24
SEG:seg	:	:	:	:	:

Description

BnaA08g31040DBnaA08g31040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JFZ0]

Coordinates

chrLK034391:+:5093..9057

Molecular Weight (calculated)

80403.9 Da

IEP (calculated)

8.613

GRAVY (calculated)

-0.501

Length

717 amino acids

Sequence
(BLAST)

001: MKKSPLPVQN VNRSDKNVAG KEALVKLLRW HFGHGDFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVRNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHDRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLT DVPVLALTAT
201: AAPKVQKDVI DSLSLRNPLV LKSSFNRPNI FYEVRYKDLI DNAYTDLCNM LKSCGKICAI IYCLERTTCD DLSLHLTSTG ISSAAYHAGL NSHLRSTVLD
301: DWLSSKKQVI VATVAFGSWG HVINALMVFL QNDKKDVRMV CHFNVPKSME SFYQESGRAG RDQLPSRSVL YYGVDDRKKM EFLLRNSENK KSPSSSSKKP
401: TSDFEQIVRY CEGSGCRRKK ILESFGEEFP VQQCKKTCDA CKHPNQVARS LEELTTTASR RHNSSRVFIT SSSDNKTNEG QYSEFWNRNE DGSNSDEEIS
501: DSDDGADVVK SLAGPKLSRK LGVDEKLVLL ERAEEKYNES NKQVKKSEKN AISETLRESS KQRLLNELTK VLQLLGVKEI DSQNASEFLE SECYRKYSKA
601: GKSFYYSQIA STVRWLGTAS RDELMTRLSS MAREEEPSGE PILVTEPSQN IEQEDGTTYT AEPHVDETTQ QLVISPSCSP IRLPEIPSFS EFVNRRKMKH
701: STEGSDGKKP SKIMKLK

Best Arabidopsis Sequence Match ( AT4G35740.1 )
(BLAST)

001: MKKSPLPVQN VQSSDKNVAG KEALVKLLRW HFGHADFRGK QLEAIQAVVS GRDCFCLMPT GGGKSICYQI PALAKPGIVL VVSPLIALME NQVMALKEKG
101: IAAEYLSSTQ ATHVKNKIHE DLDSGKPSVR LLYVTPELIA TKGFMLKLRK LHSRGLLNLI AIDEAHCISS WGHDFRPSYR QLSTLRDSLA DVPVLALTAT
201: AAPKVQKDVI DSLNLRNPLV LKSSFNRPNI FYEVRYKDLL DNAYTDLGNL LKSCGNICAI IYCLERTTCD DLSVHLSSIG ISSAAYHAGL NSKMRSTVLD
301: DWLSSKKQII VATVAFGMGI DKKDVRMVCH FNIPKSMESF YQESGRAGRD QLPSRSVLYY GVDDRKKMEY LLRNSENKKS SSSKKPTSDF EQIVTYCEGS
401: GCRRKKILES FGEEFPVQQC KKTCDACKHP NQVAHCLEEL MTTASRRHNS SRIFITSSNN KTNEGQYSEF WNRNEDGSNS NEEISDSDDA TEAANSVTGP
501: KLSKKLGLDE KLVLLEQAEE KYYERNKQVK KSEKNAISEA LRDSSKQRLL DALTRVLQLL ACVEEIDSQK GSEFLENECY RKYSKAGKSF YYSQIASTVR
601: WLGTASRDEL MTRLSSVVSL AREQEPLEEP LLATEPVENI EEEDDGKTNT VESRVDEPTQ ELVVSPILSP IRLPQVPSFS EFVNRRKIKQ NTLIDKSSEG
701: FDDKKPAKIM KLQ

Arabidopsis Description

RECQL3ATP-dependent DNA helicase Q-like 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FT72]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.