Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15702 | Canola | nucleus | 92.83 | 87.96 |
| AT1G27880.1 | Thale cress | nucleus | 84.04 | 84.96 |
| VIT_01s0010g02590.t01 | Wine grape | mitochondrion | 50.05 | 67.01 |
| GSMUA_Achr6P28390_001 | Banana | cytosol, nucleus, plastid | 30.08 | 56.88 |
| KRH42637 | Soybean | nucleus | 54.4 | 55.42 |
| GSMUA_Achr6P28400_001 | Banana | cytosol, plastid | 11.73 | 53.47 |
| Solyc05g014690.1.1 | Tomato | nucleus | 54.51 | 50.1 |
| Os04t0486800-01 | Rice | nucleus | 49.73 | 49.46 |
| OQU81827 | Sorghum | cytosol, extracellular | 9.55 | 49.16 |
| TraesCS2B01G363700.1 | Wheat | nucleus | 49.4 | 49.03 |
| TraesCS2A01G345300.1 | Wheat | nucleus | 48.97 | 48.39 |
| TraesCS2D01G344000.2 | Wheat | nucleus | 49.29 | 48.35 |
| Zm00001d025722_P002 | Maize | nucleus | 48.53 | 48.17 |
| EES12342 | Sorghum | plastid | 49.08 | 46.79 |
| HORVU2Hr1G084110.2 | Barley | plastid | 47.56 | 46.15 |
| CDY41637 | Canola | nucleus | 11.84 | 32.63 |
| CDY66905 | Canola | nucleus | 15.96 | 24.14 |
| CDY27743 | Canola | nucleus | 15.85 | 23.97 |
| CDY64039 | Canola | nucleus | 16.61 | 21.34 |
| CDY12420 | Canola | nucleus | 16.94 | 18.84 |
| CDY40476 | Canola | nucleus | 19.44 | 15.9 |
| CDY12873 | Canola | nucleus | 19.44 | 15.85 |
| CDY34859 | Canola | nucleus | 19.22 | 15.58 |
| CDY34669 | Canola | nucleus | 19.54 | 15.53 |
| CDY20595 | Canola | nucleus | 19.65 | 15.27 |
| CDY20972 | Canola | nucleus | 19.33 | 15.05 |
| CDX80626 | Canola | golgi, mitochondrion | 11.62 | 14.21 |
| CDX80633 | Canola | nucleus | 4.34 | 10.81 |
| CDX80627 | Canola | nucleus | 4.34 | 10.75 |
| CDX97959 | Canola | nucleus | 1.41 | 4.87 |
| CDX89177 | Canola | nucleus | 1.41 | 4.87 |
| CDY27742 | Canola | mitochondrion | 0.11 | 4.0 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078EPQ4 | EnsemblPlants:CDY03955 | ProteinID:CDY03955 | ProteinID:CDY03955.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DNA/RNA_helicase_DEAH_CS | InterPro:DNA_helicase_ATP-dep_RecQ | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006310 |
| GO:GO:0008026 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00117469001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | ScanProsite:PS00690 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR13710 | PANTHER:PTHR13710:SF108 |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TIGRFAMs:TIGR00614 | UniParc:UPI0004EDFF8C | SEG:seg |
Description
BnaC07g11800D
Coordinates
chrLK031947:+:1043392..1048380
Molecular Weight (calculated)
101976.0 Da
IEP (calculated)
8.907
GRAVY (calculated)
-0.267
Length
921 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSDTDSDGS HISATPPRDP FPPPPPKQVP RRPPQPPPPR KVPPGSRKAP SSSSSSSSRS KPKAHTHPQP PDHSEEAPLP SFSSPPPSLF TDLPFRICEP
101: SNRSKPAGFS SSVSSFYRLP RASPAPEDTS KSECVNHIPE LPHVPLVPPK PVRRKPPNLI MDSISSQPLK APVVFRSGGE GNFVKLNLNG KRGKKFPSKY
201: KSASKSRSKF AYRGKRYKKS EANGEDEEGE TWLEEESDLQ REANGFISSV EDAVLAVKTE ASDENLTKLL SLVYGYESFR DGQLQAIKMV LSGSSTMLVL
301: PTGAGKSLCY QIPAMILPGI TLVVSPLVSL MIDQLKHLPS VIKGGLLSSS QRPEEATETL RKLKEGIIKV LFVSPERLLN VEFLSMFRMS LSVSLVVVDE
401: AHCVSEWSHN FRPSYMRLKA SMLYSALKAD CILAMTATAT TMTLQAVMSA LEIPSTNLIQ KSQLRDNFEL SVSLSGANRH VLYLLVLMES QPYKKIRSII
501: VYCKFQYETD MISKYLRDNN ITAKGYHSGL PAKDRVRIQE AFSSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSLEEY VQEIGRAGRD GRLSYCHLFY
601: DEDTYLKLRS LSHSDGVDEY AVGKFLTHVF SFDTKQHEKI CSIVIESASH KFDMKEEVMQ TILTHLELGE VQYLRMLPQV NICCTLNFHK SSPNILAARN
701: IIVAAILKKS HVKQGLYVFD IPTVASSTGV ATTDVLAEIQ TLKMKGEVTY ETKDPAFCYT ILESPKDTSS LSSHLTKWLA EVEFCKVRKL DIMSSAAMAA
801: INVSNTSETS SGAEQTLSLQ SRILDYFNGD ENCDVPSKTT QNCSFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSIWSKTHFW GRYMSVDFRV
901: IMEAAQTELM NFVDRNAALA S
101: SNRSKPAGFS SSVSSFYRLP RASPAPEDTS KSECVNHIPE LPHVPLVPPK PVRRKPPNLI MDSISSQPLK APVVFRSGGE GNFVKLNLNG KRGKKFPSKY
201: KSASKSRSKF AYRGKRYKKS EANGEDEEGE TWLEEESDLQ REANGFISSV EDAVLAVKTE ASDENLTKLL SLVYGYESFR DGQLQAIKMV LSGSSTMLVL
301: PTGAGKSLCY QIPAMILPGI TLVVSPLVSL MIDQLKHLPS VIKGGLLSSS QRPEEATETL RKLKEGIIKV LFVSPERLLN VEFLSMFRMS LSVSLVVVDE
401: AHCVSEWSHN FRPSYMRLKA SMLYSALKAD CILAMTATAT TMTLQAVMSA LEIPSTNLIQ KSQLRDNFEL SVSLSGANRH VLYLLVLMES QPYKKIRSII
501: VYCKFQYETD MISKYLRDNN ITAKGYHSGL PAKDRVRIQE AFSSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSLEEY VQEIGRAGRD GRLSYCHLFY
601: DEDTYLKLRS LSHSDGVDEY AVGKFLTHVF SFDTKQHEKI CSIVIESASH KFDMKEEVMQ TILTHLELGE VQYLRMLPQV NICCTLNFHK SSPNILAARN
701: IIVAAILKKS HVKQGLYVFD IPTVASSTGV ATTDVLAEIQ TLKMKGEVTY ETKDPAFCYT ILESPKDTSS LSSHLTKWLA EVEFCKVRKL DIMSSAAMAA
801: INVSNTSETS SGAEQTLSLQ SRILDYFNGD ENCDVPSKTT QNCSFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSIWSKTHFW GRYMSVDFRV
901: IMEAAQTELM NFVDRNAALA S
001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T
Arabidopsis Description
RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.