CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025722_P002	Maize	nucleus	89.44	93.1
Os04t0486800-01	Rice	nucleus	78.36	81.75
TraesCS2B01G363700.1	Wheat	nucleus	74.74	77.8
TraesCS2A01G345300.1	Wheat	nucleus	74.84	77.58
TraesCS2D01G344000.2	Wheat	nucleus	74.64	76.78
OQU81827	Sorghum	cytosol, extracellular	13.66	73.74
HORVU2Hr1G084110.2	Barley	plastid	69.15	70.39
GSMUA_Achr6P28390_001	Banana	cytosol, nucleus, plastid	31.99	63.45
VIT_01s0010g02590.t01	Wine grape	mitochondrion	44.31	62.21
GSMUA_Achr6P28400_001	Banana	cytosol, plastid	12.42	59.41
KRH58739	Soybean	cytosol	10.56	58.62
KRH42637	Soybean	nucleus	50.41	53.87
AT1G27880.1	Thale cress	nucleus	46.48	49.29
CDY03955	Canola	nucleus	46.79	49.08
Solyc05g014690.1.1	Tomato	nucleus	49.59	47.8
CDY15702	Canola	nucleus	47.0	46.71
Bra030065.1-P	Field mustard	nucleus	47.0	46.71
EES10228	Sorghum	nucleus	16.77	25.96
KXG38755	Sorghum	nucleus	15.73	21.41
KXG31219	Sorghum	nucleus	15.42	19.81
EES19033	Sorghum	nucleus	15.63	17.48
EER97745	Sorghum	nucleus	15.63	16.76
EES06253	Sorghum	nucleus	18.32	14.81
Solyc09g018690.2.1	Tomato	nucleus	2.48	4.73
CDX97959	Canola	nucleus	1.04	3.75
CDX89177	Canola	nucleus	1.04	3.75

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8058688	UniProt:C5YAB4	InterPro:DEAD/DEAH_box_helicase_dom	InterPro:DNA_helicase_ATP-dep_RecQ
EnsemblPlants:EES12342	ProteinID:EES12342	ProteinID:EES12342.2	GO:GO:0000166	GO:GO:0003333	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0006139	GO:GO:0006259	GO:GO:0006310	GO:GO:0006810
GO:GO:0008026	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015171	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR13710
PANTHER:PTHR13710:SF108	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3006G126800	SUPFAM:SSF52540	unigene:Sbi.9121
TIGRFAMs:TIGR00614	UniParc:UPI000B8BAF65	RefSeq:XP_002448014.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:49189079..49197953

Molecular Weight (calculated)

106154.0 Da

IEP (calculated)

9.411

GRAVY (calculated)

-0.274

Length

966 amino acids

Sequence
(BLAST)

001: MPPAPPSLQF FPQIPRYSPL RLRPRLRRRA PPPAPPPTPM YSHLPAGDSD SEGSLISDVS ASPTRVRSPP PRPPPEPRPN PKHTAAVKPK PKPRAPKSKA
101: KPKPAASACT AAASPPPLPS AALSDPHGLV SRIAAAPALV AATSTVSSSS FRRLVQSRNP SFDPAVAFSA PTPAPTPAPT EIATAAAAQC PAPDAPPQTR
201: PKRVHPNSVS EVAPAAAEAE QPKRPRGGAE GNFVRLNING YGRRRTFKNA QARRPTKYRS WRRQRHGGAK PQSCGDEEGD LVAEALIERE KKGAVGDNGV
301: LEAVEAARED PSEQNLESLL RVVYGYNSFR VGQLEAIQKV VAGESTMLVL PTGAGKSLCY QVPAMILPGL TLVVSPLLSL MVDQLRKLPA FLPGGLLASN
401: QTSDEFHETL QRLRGGEIKV LFVSPERFLN EEFLLIFRDG LPISLVAIDE AHCISEWSHN FRPSYLRLRA SLLRRKLNVQ CILAMTATAT TQTLEEIVTA
501: LEIPSDNLIK TSQIRDNLQL SISTSNNRLK DLLLLLKSSP FVDMKSIIVY CKFQGETDYV SKYLCDNNIT AKSYHSGLAM KNRSRVQELF CSNKIRVVVA
601: TVAFGMGLDK SDVEGVIHYS LPESLEEYIQ ETGRAGRDGR LSYCHLLLDS TTFYKSRSLS HSDGVDEYAM SKFLCQVFSC DNSVGHICSL VKESTSRKFD
701: IKEEVLLTVL TQLEIGGQQY LRLLPQFSVT CTLYFHKTSP QLLADKDVLV RSVLNKSETK GGNFVFDMTK VANDLSITVN EVFDHLQQLK FSGEISFELK
801: DPACIYVILK KPDDLNALSA NITKWLSEVE NSKISKLDAM FDLANFAVKG CQRIDGCSGS QHTSCIQKKI IQYFSKNYST SDNNCTQPHK SSPFLQADIK
901: VFLQSNSFAK FTPRAVARIM HGISSPAFPS ATWSKNHFWG RYVEVDFPVV MEAAKAELVK FVGKGE

Best Arabidopsis Sequence Match ( AT1G27880.1 )
(BLAST)

001: MDFDSDSDGS HVSATPPRDS FPSSPPQLQS PAKHVPPVSR KMTSSSSRSK PKAPTHPPPN PSQEAPVPSP YPPPPPPSPL FTNLPFRICQ SQPARFSSSV
101: SSFSRLCSRA SFTSVEKLKS DGVDFVPEPP LVEVIAPPKS VRRKPPNLIT DTITSPPVKP MVFRSNGNGE GNFVKLNLNG KRGKKFPSKY KGVSKSRSSY
201: SFRGKRYKKK EADGDGESLL EEESDLQKQI EDEANGFISS VEDAILAVKT EASDENLTKL LNLVYGYDSF RDGQLQAIKM ILGGSSTMLV LPTGAGKSLC
301: YQIPAMILPG ITLVVSPLVS LMIDQLKHLP SIIKGGLLSS SQRPEEATET LRKLKEGIIK VLFVSPERLL NVEFLSMFRM SLSVSLVVVD EAHCVSEWSH
401: NFRPSYMRLK ASMLFSELKA ECILAMTATA TTMTLQAVMS SLEIPSTNLI QKSQLRDNFE LSVSLSGANR MKDLLILMES PPYKEIRSII VYCKFQYETD
501: MISKYLRDNN INAKGYHSGL PAKDRVRIQE SFCSNKIRVV VATVAFGMGL DKGDVGAVIH FSVPGSMEEY VQEIGRAGRD GRLSYCHLFY DNDTYLKLRS
601: LAHSDGVDEY AVGKFLTHVF STETKQHEKI CSLVIESASQ KFDMKEEVMQ TILTHLELGE VQYLRMLPQL NICCTLNFHK SSPNTLAARS AIVAAILKKS
701: HVKQGLHVFD IPAVASSICV ATTDVLAEIQ ALKMKGEVTY ELKDSAFCYT ILKSPKEICS LSSHLTKWLT EIESCKVRKL DIMSSAAVAA ISVSNTSELS
801: SGAKQTRSLQ SRIFDYFNGD EKCDSPSKAT QNCAFLRADI KVFLQSNRQA KFTPRAIARI MHGVGSPAFP NSVWSKTHFW GRYMNVDFRV IMEAAQTELF
901: NFVDRNAALA T

Arabidopsis Description

RECQL5ATP-dependent DNA helicase Q-like 5 [Source:UniProtKB/Swiss-Prot;Acc:Q0WVW7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.